RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 UFC1Q9Y3C8 167 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 IGKV1D-13A0A0B4J2D9 117 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 IGKV1-13P0DP09 117 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 PTGDSP41222 190 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 RND2P52198 227 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 FAM201AQ5SY85 155 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 WDFY1Q8IWB7 410 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 BET1LQ9NYM9 111 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 CARHSP1Q9Y2V2 147 aaKnown RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 HILPDAQ9Y5L2 63 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 TEX50A0A1B0GTY4 177 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 H3BTX0 84 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 APCSP02743 223 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 PRSS1P07477 247 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 AGAP20933 346 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 C1orf185Q5T7R7 199 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 PQLC2Q6ZP29 291 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 ZNF441Q8N8Z8 693 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 P2RX4Q99571 388 aa10.77□□□□□ -0.68
USP53-209ENST00000514665 PTPRDP23468 1912 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 DIRC3C9JPN6 131 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 F5H697 171 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 HYPMO75409 117 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 GOSR1O95249 250 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 ZNF25P17030 456 aaPredicted RBP10.77□□□□□ -0.69
USP53-209ENST00000514665 RPL39P5Q59GN2 51 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 RNF144BQ7Z419 303 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 Q8WTZ3 238 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 LINC00470Q9BZP3 86 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 TMEM191AQ9H0A3 160 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 ZMAT5Q9UDW3 170 aaKnown RBP10.77□□□□□ -0.69
USP53-209ENST00000514665 RNF24Q9Y225 148 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 CRYBB3P26998 211 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 SLC25A53Q5H9E4 307 aa10.77□□□□□ -0.69
USP53-209ENST00000514665 VWA1Q6PCB0 445 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 OR1P1Q8NH06 330 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 FBLN5Q9UBX5 448 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 BRS3P32247 399 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 LGALS7P47929 136 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 PSG7Q13046 419 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 PRR7Q8TB68 274 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 C1QTNF5Q9BXJ0 243 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 CISD1Q9NZ45 108 aaKnown RBP10.76□□□□□ -0.69
USP53-209ENST00000514665 GRIFINA4D1Z8 144 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 PGPA6NDG6 321 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 C17orf98A8MV24 154 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 CELA3BP08861 270 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 LINC00271P0C7V0 271 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 SP9P0CG40 484 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 CDX1P47902 265 aaPredicted RBP10.76□□□□□ -0.69
USP53-209ENST00000514665 IBA57Q5T440 356 aaKnown RBP10.76□□□□□ -0.69
USP53-209ENST00000514665 Q6ZT83 130 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 PRNTQ86SH4 94 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 GCSAMQ8N6F7 178 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 FGFBP3Q8TAT2 258 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 WBP1Q96G27 269 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 CCL21O00585 134 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 KBTBD11O94819 623 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 TCTAP57738 103 aa10.76□□□□□ -0.69
USP53-209ENST00000514665 QTRT1Q9BXR0 403 aaKnown RBP10.76□□□□□ -0.69
USP53-209ENST00000514665 C5orf63A6NC05 138 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 M0QZ24 198 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 CDX4O14627 284 aaPredicted RBP10.75□□□□□ -0.69
USP53-209ENST00000514665 RRHO14718 337 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 REG1AP05451 166 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 CECR9P0C854 216 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 FOXG1P55316 489 aaPredicted RBP10.75□□□□□ -0.69
USP53-209ENST00000514665 RTN4RL2Q86UN3 420 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 ELOVL1Q9BW60 279 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 OR51M1Q9H341 326 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 GSX1Q9H4S2 264 aaPredicted RBP10.75□□□□□ -0.69
USP53-209ENST00000514665 DEPPQ9NTK1 212 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 DOCK11Q5JSL3 2073 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 CXorf65A6NEN9 183 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 HOXB1P14653 301 aaPredicted RBP10.75□□□□□ -0.69
USP53-209ENST00000514665 FGF11Q92914 225 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 TNFRSF19Q9NS68 423 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 ISLRO14498 428 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 SRP19P09132 144 aaKnown RBP10.75□□□□□ -0.69
USP53-209ENST00000514665 ECSCRQ19T08 205 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 KRTCAP3Q53RY4 240 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 FAM89BQ8N5H3 189 aa10.75□□□□□ -0.69
USP53-209ENST00000514665 NUBP1P53384 320 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 ZNF506Q5JVG8 444 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 C1orf174Q8IYL3 243 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 TMEM45BQ96B21 275 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 WDR90Q96KV7 1748 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 F2RL2O00254 374 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 RIGQ13278 110 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 EIF4E3Q8N5X7 224 aaKnown RBP10.74□□□□□ -0.69
USP53-209ENST00000514665 C1RLQ9NZP8 487 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 JPT1Q9UK76 154 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 GBF1Q92538 1859 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 IGKV1-12A0A0C4DH73 117 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 KLF7O75840 302 aaPredicted RBP10.74□□□□□ -0.69
USP53-209ENST00000514665 IGKV1D-12P01611 117 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 CD40P25942 277 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 GTF2H5Q6ZYL4 71 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 ASCL5Q7RTU5 278 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 OR13A1Q8NGR1 328 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms