RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 HTN1P15515 57 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 KRTCAP3Q53RY4 240 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 GFRALQ6UXV0 394 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 HILPDAQ9Y5L2 63 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 TRAV5A0A0B4J249 113 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 EDIL3O43854 480 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 C1QAP02745 245 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 FAM106CPP0CH98 169 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 CBLN3Q6UW01 205 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 GDF15Q99988 308 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 NBEAP1P0C6P0 100 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 COX5BP10606 129 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 GFERP55789 205 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 SIGLEC14Q08ET2 396 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 ALKBH6Q3KRA9 238 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 LOXL4Q96JB6 756 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 GNRHR2Q96P88 292 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 NPCDR1Q9BY65 106 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 PARP4Q9UKK3 1724 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 F8VVB4 439 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 F8VWA3 439 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 TNFRSF6BO95407 300 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 FSCN3Q9NQT6 498 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 SIRT4Q9Y6E7 314 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 MYH13Q9UKX3 1938 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 PTGDSP41222 190 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 ZNF415Q09FC8 603 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 LPAL2Q16609 132 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 ASCL2Q99929 193 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 TMEM14DPA8MWL7 114 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 IGKCP01834 107 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 UMODP07911 640 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 POU2AF1Q16633 256 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 TMEM86BQ8N661 226 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 OR4D11Q8NGI4 311 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 PATE1Q8WXA2 126 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 CXCL16Q9H2A7 254 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 LIMS1P48059 325 aa9.63□□□□□ -0.87
LIMCH1-217ENST00000512946 IL6RP08887 468 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 UCP1P25874 307 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 FOXL1Q12952 345 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 C1orf185Q5T7R7 199 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 VN1R4Q7Z5H5 301 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 FER1L6-AS1Q8NA97 138 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 C18orf15Q96N68 181 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 EDA2RQ9HAV5 297 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 M0R2P5 195 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 IFI27P40305 119 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 SHISA5Q8N114 240 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 ST6GALNAC6Q969X2 333 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 Q96M66 194 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 SSBP3Q9BWW4 388 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 NPIPB13A6NJU9 1138 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 PRRT4C9JH25 899 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 CD160O95971 181 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 NPPCP23582 126 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 DRAM1Q8N682 238 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 KLF12Q9Y4X4 402 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 A0A1W2PRE2 83 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 GAGE12BA1L429 117 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 SNRPD3P62318 126 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 TNFRSF14Q92956 283 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 PLEKHB2Q96CS7 222 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 RNF186Q9NXI6 227 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 PDE4DIPQ5VU43 2346 aa9.62□□□□□ -0.87
LIMCH1-217ENST00000512946 TRAV8-1A0A0A6YYK1 113 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 METTL12A8MUP2 240 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 CEACAM4O75871 244 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 IFI27L1Q96BM0 104 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 GTSF1LQ9H1H1 148 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 NEUROG3Q9Y4Z2 214 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 TRAV2A0A0B4J234 112 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 ZG16O60844 167 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 NAPSAO96009 420 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 AMBPP02760 352 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 INAFM2P0DMQ5 153 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 GAGE1Q13065 139 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 OCIAD2Q56VL3 154 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 FBXW9Q5XUX1 488 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 TRAV24A0A0B4J272 114 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 MLNRO43193 412 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 UPK3AO75631 287 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 CFAP161Q6P656 301 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 ATRAIDQ6UW56 229 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 GPBAR1Q8TDU6 330 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 ABHD17AQ96GS6 310 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 IDI2-AS1Q9NZ38 188 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 BAZ2AQ9UIF9 1905 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 HS3ST3B1Q9Y662 390 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 KNDC1Q76NI1 1749 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 LDLRAD4O15165 306 aa9.61□□□□□ -0.87
LIMCH1-217ENST00000512946 RNF222A6NCQ9 220 aa9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 IGHV4-39P01824 125 aa9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 TMEM258P61165 79 aa9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 RNASEH2CQ8TDP1 164 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 COQ2Q96H96 371 aa9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 MRPL27Q9P0M9 148 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 TRBV20-1A0A075B6N2 111 aa9.6□□□□□ -0.87
LIMCH1-217ENST00000512946 COLCA2A8K830 154 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms