RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ZNF835Q9Y2P0 537 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 TRAV9-1A0A075B6T8 112 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 H3BMH7 237 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 AGFG2O95081 481 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 CNIH1O95406 144 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 SMIM17P0DL12 118 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 GPM6AP51674 278 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 RPL31P62899 125 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 RPL8P62917 257 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 ASPHD1Q5U4P2 390 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 BPIFA4PQ86YQ2 179 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 MRAP2Q96G30 205 aa10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 SSBP4Q9BWG4 385 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-213ENST00000511496 FBXW4P57775 412 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 AESQ08117 197 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 C5orf64Q2M2E5 130 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 SSX8Q7RTT4 187 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 OR5A2Q8NGI9 324 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 H3BML4 177 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 HNRNPA1P09651 372 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 F2RP25116 425 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 PTGDSP41222 190 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 CLRN1P58418 232 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 ZNF331Q9NQX6 463 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 PRTFDC1Q9NRG1 225 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 EDDM13A0A1B0GTR0 161 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 P2RY2P41231 377 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 CX3CL1P78423 397 aa10.14□□□□□ -0.79
LIMCH1-213ENST00000511496 LOC102723996A0A087X1L8 192 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 CA1P00915 261 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 NRN1LQ496H8 165 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 RNFT1Q5M7Z0 435 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 VSTM2AQ8TAG5 236 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM45BQ96B21 275 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 OR2D2Q9H210 308 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 TBC1D29Q9UFV1 150 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 KCNS2Q9ULS6 477 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 TIMM9Q9Y5J7 89 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 V9GYV3 84 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 CXorf51AA0A1B0GTR3 108 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 HLA-DQA1P01909 254 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 FTH1P19P0C7X4 201 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 TM4SF4P48230 202 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 ATP5G2Q06055 141 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 OSR2Q8N2R0 312 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 NEU4Q8WWR8 484 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 SPACA9Q96E40 222 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 DEPPQ9NTK1 212 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 H0Y980 276 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 PDCD6O75340 191 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 DHRS3O75911 302 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 AMY1AP04745 511 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 CEBPDP49716 269 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 KIR3DS1Q14943 382 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 NPCDR1Q9BY65 106 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 HES4Q9HCC6 221 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 PHPT1Q9NRX4 125 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 PGPEP1Q9NXJ5 209 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 Q9Y3F1 56 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 ATP23Q9Y6H3 246 aa10.13□□□□□ -0.79
LIMCH1-213ENST00000511496 IGHG1P01857 330 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 CLEC3BP05452 202 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 ARL14EPLP0DKL9 152 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 COL8A2P25067 703 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 CD1BP29016 333 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 HINT2Q9BX68 163 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 STRADBQ9C0K7 418 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM191AQ9H0A3 160 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 TNFRSF19Q9NS68 423 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 C5orf42Q9H799 3197 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 PSMB11A5LHX3 300 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 A6NDN8 102 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 SEC11AP67812 179 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 SPINK9Q5DT21 86 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 ADAMTSL5Q6ZMM2 481 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 ACP7Q6ZNF0 438 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 SHISA6Q6ZSJ9 500 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 H1FNTQ75WM6 255 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 LSM10Q969L4 123 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 BORCS8Q96FH0 119 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 EAF1Q96JC9 268 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 SCRT2Q9NQ03 307 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 KCNIP1Q9NZI2 227 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 MYO7AQ13402 2215 aa10.12□□□□□ -0.79
LIMCH1-213ENST00000511496 H3BRM9 83 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SLC23A3Q6PIS1 610 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SPACA3Q8IXA5 215 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 MRPL43Q8N983 215 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 CACNG8Q8WXS5 425 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 PP6455Q8WZ26 134 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM147Q9BVK8 224 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 NCOA6Q14686 2063 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SYS1-DBNDD2H3BUS1 97 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 J3QR89 54 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 IGHMP01871 453 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 VWC2Q2TAL6 325 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 DHRS13Q6UX07 377 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SFTPA1Q8IWL2 248 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 OR5A1Q8NGJ0 315 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms