RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 OR2G2Q8NGZ5 317 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 RTN4IP1Q8WWV3 396 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 SLAMF9Q96A28 289 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 COQ2Q96H96 371 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 USMG5Q96IX5 58 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 LINC00479Q96M42 142 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 KCTD7Q96MP8 289 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 Q96MT0 163 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 S100A13Q99584 98 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 RIMS4Q9H426 269 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 Q9H521 79 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 ISYNA1Q9NPH2 558 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 TMEM138Q9NPI0 162 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 PLSCR3Q9NRY6 295 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 RBFOX1Q9NWB1 397 aaKnown RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 TVP23BQ9NYZ1 205 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 PIPOXQ9P0Z9 390 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 ZNF107Q9UII5 783 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 PSG11Q9UQ72 335 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 FOXA2Q9Y261 457 aaPredicted RBP2.94□□□□□ -1.94
USP54-217ENST00000498213 ST3GAL6Q9Y274 331 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 KLHDC2Q9Y2U9 406 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 WSB1Q9Y6I7 421 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 FAT1Q14517 4588 aa2.94□□□□□ -1.94
USP54-217ENST00000498213 DNAH6Q9C0G6 4158 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 DNAH5Q8TE73 4624 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 IGKV1-27A0A075B6S5 117 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TRAV41A0A0B4J266 112 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 IGKV1-9A0A0C4DH69 117 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 A0A0J9YWU9 116 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 A0A1W2PQL4 384 aaPredicted RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 C16orf90A8MZG2 172 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 PRKYO43930 277 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 YPEL1O60688 119 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 SC5DO75845 299 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 OR2A4O95047 310 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 FADS2O95864 444 aaKnown RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 IGLV1-51P01701 117 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 UBBP0CG47 229 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 BCL3P20749 454 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 CRHBPP24387 322 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ALDH3B2P48448 385 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 POU3F4P49335 361 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 SNRPGP62308 76 aaKnown RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 PPP3R1P63098 170 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 AESQ08117 197 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 PLA2G7Q13093 441 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 CDK5R1Q15078 307 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 HAGHQ16775 308 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ANKRD55Q3KP44 614 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 KCTD21Q4G0X4 260 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 C9orf152Q5JTZ5 239 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 PRAMEF5Q5TYX0 476 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TTC23Q5W5X9 447 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 XAF1Q6GPH4 301 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ZNF562Q6V9R5 426 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 MOB1BQ7L9L4 216 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 MOB3BQ86TA1 216 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 C8orf59Q8N0T1 100 aaPredicted RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 ACBD7Q8N6N7 88 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ZNF645Q8N7E2 425 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 NKAIN3Q8N8D7 197 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ZNF555Q8NEP9 628 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TRMT10AQ8TBZ6 339 aaKnown RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 TSEN15Q8WW01 171 aaKnown RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 GHSRQ92847 366 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ZNF488Q96MN9 340 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 YPEL2Q96QA6 119 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 ZNF251Q9BRH9 671 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 CHST6Q9GZX3 395 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TOLLIPQ9H0E2 274 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 METTL9Q9H1A3 318 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 MED20Q9H944 212 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 FKBP14Q9NWM8 211 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 IMPAD1Q9NX62 359 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TECRQ9NZ01 308 aaKnown RBP2.93□□□□□ -1.94
USP54-217ENST00000498213 KCNIP1Q9NZI2 227 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 CKLFQ9UBR5 152 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 CACNG5Q9UF02 275 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 TP53TG1Q9Y2A0 90 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 GSTK1Q9Y2Q3 226 aa2.93□□□□□ -1.94
USP54-217ENST00000498213 DSCAML1Q8TD84 2053 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 TRAV24A0A0B4J272 114 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 NUPR2A6NF83 97 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 MCRIP1C9JLW8 97 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 F8VVB4 439 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 F8VWA3 439 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 C15orf65H3BRN8 121 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 H3BSH0 61 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 J3QRE1 110 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 SIRPB1O00241 398 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 SDCBPO00560 298 aaPredicted RBP2.92□□□□□ -1.94
USP54-217ENST00000498213 RAB29O14966 203 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 SLC22A1O15245 554 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 RTL8CO15255 209 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 NBR2O15453 112 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 SAP30O75446 220 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 MMP23AO75900 390 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 TNFAIP8O95379 198 aa2.92□□□□□ -1.94
USP54-217ENST00000498213 SPNP16150 400 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms