RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	PLEKHA3	Q9HB20	300 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	RETN	Q9HD89	108 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	CEPT1	Q9Y6K0	416 aa		13.96	□□□□□ -0.17
HDAC6-231	ENST00000488905	IGKV1D-8	A0A087WSZ0	117 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	TRBV9	A0A0B4J1U6	114 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	TRAV1-2	A0A0B4J238	106 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	IFITM5	A6NNB3	132 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	TUSC2	O75896	110 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	TALDO1	P37837	337 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	ARFRP1	Q13795	201 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	CDK10	Q15131	360 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	TBCE	Q15813	527 aa	Predicted RBP	13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	SSX1	Q16384	188 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	LAX1	Q8IWV1	398 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	SPIN2A	Q99865	258 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	SPIN2B	Q9BPZ2	258 aa		13.95	□□□□□ -0.18
HDAC6-231	ENST00000488905	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	ACTL6B	O94805	426 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	MYL9	P24844	172 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	ATP5G2	Q06055	141 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	CD300E	Q496F6	205 aa	Predicted RBP	13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	C10orf55	Q5SWW7	151 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	ZNF367	Q7RTV3	350 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	ZNF645	Q8N7E2	425 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	NRG4	Q8WWG1	115 aa		13.94	□□□□□ -0.18
HDAC6-231	ENST00000488905	METTL21EP	A6NDL7	271 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	DTYMK	P23919	212 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	LINC00322	Q6ZN03	302 aa	Predicted RBP	13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	KCTD9	Q7L273	389 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	MMD2	Q8IY49	270 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	TTC9C	Q8N5M4	171 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	NECAP1	Q8NC96	275 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	DYNLRB2	Q8TF09	96 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	NEURL2	Q9BR09	285 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	HIPK2	Q9H2X6	1198 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	NDUFB11	Q9NX14	153 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	SLC2A8	Q9NY64	477 aa		13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	ELF5	Q9UKW6	265 aa	Predicted RBP	13.93	□□□□□ -0.18
HDAC6-231	ENST00000488905	ANKRD65	E5RJM6	399 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	FCGR3B	O75015	233 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	TPPP	O94811	219 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	CD36	P16671	472 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	RAB3B	P20337	219 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	C15orf32	Q32M92	178 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	FAM209B	Q5JX69	171 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	FAM110A	Q9BQ89	295 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	DCUN1D5	Q9BTE7	237 aa		13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905	MRPS7	Q9Y2R9	242 aa	Known RBP	13.92	□□□□□ -0.18
HDAC6-231	ENST00000488905		J3QRK9	145 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	CD7	P09564	240 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	ARL6IP1	Q15041	203 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	OR2B11	Q5JQS5	317 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	SLC25A42	Q86VD7	318 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	KCTD12	Q96CX2	325 aa	Known RBP	13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	WFDC10A	Q9H1F0	79 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	ATG5	Q9H1Y0	275 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	ZC4H2	Q9NQZ6	224 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	ZNF257	Q9Y2Q1	563 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	PRELID3B	Q9Y3B1	194 aa		13.91	□□□□□ -0.18
HDAC6-231	ENST00000488905	C2orf70	A6NJV1	201 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	TEX22	C9J3V5	150 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	PPP5D1	E7EU14	171 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	OR2J3	O76001	311 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	RPL30	P62888	115 aa	Known RBP	13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	NR2C2AP	Q86WQ0	139 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	DEFB125	Q8N687	156 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	RBMX2	Q9Y388	322 aa	Known RBP	13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	OR2W1	Q9Y3N9	320 aa		13.9	□□□□□ -0.18
HDAC6-231	ENST00000488905	TRDV1	A0A1B0GX56	115 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	HMX3	A6NHT5	357 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	ZNF785	A8K8V0	405 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	SLC22A5	O76082	557 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	JTB	O76095	146 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	KBTBD11	O94819	623 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	IGLV2-14	P01704	120 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	HLA-DQB1	P01920	261 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	CTXN2	P0C2S0	81 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	EDN2	P20800	178 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	NFYA	P23511	347 aa	Predicted RBP	13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	DEFB114	Q30KQ6	69 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	C19orf35	Q6ZS72	473 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	VKORC1L1	Q8N0U8	176 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	OR4S2	Q8NH73	311 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	IL17D	Q8TAD2	202 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	VSTM2A	Q8TAG5	236 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	ST6GALNAC5	Q9BVH7	336 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	SRD5A3	Q9H8P0	318 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	BLOC1S6	Q9UL45	172 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	DMRT1	Q9Y5R6	373 aa		13.89	□□□□□ -0.19
HDAC6-231	ENST00000488905	IGKV1D-13	A0A0B4J2D9	117 aa		13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	RBMY1B	A6NDE4	496 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	RBMY1E	A6NEQ0	496 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	NPIPB5	A8MRT5	1133 aa		13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	GGCT	O75223	188 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	HLA-A	P01891	365 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	RBMY1D	P0C7P1	496 aa	Known RBP	13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	IGKV1-13	P0DP09	117 aa		13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	FOLR2	P14207	255 aa		13.88	□□□□□ -0.19
HDAC6-231	ENST00000488905	CDNF	Q49AH0	187 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms