RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 KLHL30-AS1Q8NEE0 82 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CD300LFQ8TDQ1 290 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CYYR1Q96J86 154 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 NOL4LQ96MY1 436 aaPredicted RBP6.38□□□□□ -1.39
USP40-216ENST00000485943 CITED1Q99966 193 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 MCUBQ9NWR8 336 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 COPZ2Q9P299 210 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 GAB2Q9UQC2 676 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 C14orf166Q9Y224 244 aaKnown RBP6.38□□□□□ -1.39
USP40-216ENST00000485943 RBMX2Q9Y388 322 aaKnown RBP6.38□□□□□ -1.39
USP40-216ENST00000485943 IGKV1D-8A0A087WSZ0 117 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 TRAV41A0A0B4J266 112 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 GABARAPH6UMI1 98 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 GPR31O00270 319 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ATG12O94817 140 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 RAB3DO95716 219 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 CA2P00918 260 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 IGHG2P01859 326 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 HLA-DRB1P01911 266 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 HLA-DQB1P01920 261 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 TBPP20226 339 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 DYRK1AQ13627 763 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 FXYD3Q14802 87 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 MEF2DQ14814 521 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ZNF660Q6AZW8 331 aaPredicted RBP6.37□□□□□ -1.39
USP40-216ENST00000485943 SSX9Q7RTT3 188 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 PPP1R27Q86WC6 154 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ODF3L1Q8IXM7 274 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 SLC38A6Q8IZM9 456 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 SPAG16Q8N0X2 631 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 TCTEX1D1Q8N7M0 179 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 OR5AN1Q8NGI8 311 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ZFAND1Q8TCF1 268 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 GIMAP1Q8WWP7 306 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ARPC1AQ92747 370 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 SCGB3A2Q96PL1 93 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 CITED2Q99967 270 aaPredicted RBP6.37□□□□□ -1.39
USP40-216ENST00000485943 PDCD10Q9BUL8 212 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 OR51J1Q9H342 316 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 CCL28Q9NRJ3 127 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 ZFP57Q9NU63 452 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 SERTAD4Q9NUC0 356 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 COA4Q9NYJ1 87 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 SCP2D1Q9UJQ7 156 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 WSB1Q9Y6I7 421 aa6.37□□□□□ -1.39
USP40-216ENST00000485943 TEX13DA0A0J9YY54 714 aaPredicted RBP6.36□□□□□ -1.39
USP40-216ENST00000485943 C13orf42A0A1B0GVH6 325 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 M0QYG6 137 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 CTDSP2O14595 271 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 ATP6V0E1O15342 81 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 SNAPC5O75971 98 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 TPPPO94811 219 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 DHFRP00374 187 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 RLN1P04808 185 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 SERPINE2P07093 398 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 ELANEP08246 267 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 AKAIN1P0CW23 69 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 DEFA4P12838 97 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 CNTFRP26992 372 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 DUTP33316 252 aaKnown RBP6.36□□□□□ -1.39
USP40-216ENST00000485943 PPP5CP53041 499 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 SSBP1Q04837 148 aaKnown RBP6.36□□□□□ -1.39
USP40-216ENST00000485943 PSG5Q15238 335 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 PHLDA2Q53GA4 152 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 TRIQKQ629K1 86 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 ZNF57Q68EA5 555 aaPredicted RBP6.36□□□□□ -1.39
USP40-216ENST00000485943 Q6ZPA2 131 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 SLC25A42Q86VD7 318 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 MMD2Q8IY49 270 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 FAM71E2Q8N5Q1 922 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 ZNF383Q8NA42 475 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 NPBQ8NG41 125 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 GPX8Q8TED1 209 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 AGMATQ9BSE5 352 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 GPR61Q9BZJ8 451 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 COMMD5Q9GZQ3 224 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 TOLLIPQ9H0E2 274 aa6.36□□□□□ -1.39
USP40-216ENST00000485943 FOXA2Q9Y261 457 aaPredicted RBP6.36□□□□□ -1.39
USP40-216ENST00000485943 CENPXA8MT69 81 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 ZNF701M0R085 212 aaPredicted RBP6.35□□□□□ -1.39
USP40-216ENST00000485943 OR2A4O95047 310 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 NDUFA3O95167 84 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 HPRT1P00492 218 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 IGKV1-16P04430 117 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 NQO2P16083 231 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 SLC6A1P30531 599 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 AKR1C2P52895 323 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 TPPP2P59282 170 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 CX3CL1P78423 397 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 TRIM16LQ309B1 348 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 STEAP1BQ6NZ63 245 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 OVCH2Q7RTZ1 564 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 TOMM5Q8N4H5 51 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 ARRDC1Q8N5I2 433 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 Q8N6K4 173 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 TEX45Q8NA69 505 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 OR5M8Q8NGP6 311 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 OR52I2Q8NH67 350 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 DYNC2LI1Q8TCX1 351 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 SNAPC3Q92966 411 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms