RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CDKN1AP38936 164 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 Q8IYB0 196 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 FAM122AQ96E09 287 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 OPN3Q9H1Y3 402 aaPredicted RBP11.14□□□□□ -0.63
USP40-214ENST00000483519 OR2D2Q9H210 308 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 IL36BQ9NZH7 164 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 WDR83OSQ9Y284 106 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 WIPI2Q9Y4P8 454 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 ARHGAP21Q5T5U3 1957 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 S1PR2O95136 353 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 CLDN14O95500 239 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 RFPL3SP0C7P2 107 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 SELEP16581 610 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 ARR3P36575 388 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 LINC00310P59036 64 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 RPS16P62249 146 aaKnown RBP11.14□□□□□ -0.63
USP40-214ENST00000483519 PLP2Q04941 152 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 H2BFWTQ7Z2G1 175 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 QTRT1Q9BXR0 403 aaKnown RBP11.14□□□□□ -0.63
USP40-214ENST00000483519 KCNIP1Q9NZI2 227 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 ZFP30Q9Y2G7 519 aa11.14□□□□□ -0.63
USP40-214ENST00000483519 SPEGQ15772 3267 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 LAMA1P25391 3075 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 TRBV20OR9-2A0A075B6H5 130 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 IGKV3D-15A0A087WSY6 115 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 MPDU1O75352 247 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 SPINK2P20155 84 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 CD1BP29016 333 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 Q0VG73 95 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 POM121L2Q96KW2 1035 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 C3orf80F5H4A9 247 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 TRA2AQ13595 282 aaKnown RBP eCLIP11.13□□□□□ -0.63
USP40-214ENST00000483519 IL11RAQ14626 422 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 DMRTA1Q5VZB9 504 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 TCTEX1D1Q8N7M0 179 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 SIGLECL1Q8N7X8 197 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 FSCN3Q9NQT6 498 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 ZNF586Q9NXT0 402 aa11.13□□□□□ -0.63
USP40-214ENST00000483519 SDK2Q58EX2 2172 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 TRBV9A0A0B4J1U6 114 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 KLF7O75840 302 aaPredicted RBP11.12□□□□□ -0.63
USP40-214ENST00000483519 CXorf1O96002 111 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 GDF1P27539 372 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 EDDM3BP56851 147 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 Q8N7P7 452 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 OR1L6Q8NGR2 347 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 POLDIP2Q9Y2S7 368 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 A8MXE2 369 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 FCN1O00602 326 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 ARL14EPLP0DKL9 152 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 CA6P23280 308 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 RAB7AP51149 207 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 RPL30P62888 115 aaKnown RBP11.12□□□□□ -0.63
USP40-214ENST00000483519 GCSAMLQ5JQS6 135 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 ZNF808Q8N4W9 903 aaPredicted RBP11.12□□□□□ -0.63
USP40-214ENST00000483519 OCC1Q8TAD7 63 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 SAP25Q8TEE9 199 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 GALMQ96C23 342 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 TAAR6Q96RI8 345 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 RNF2Q99496 336 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 RTL8AQ9BWD3 113 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 NCKAP5O14513 1909 aa11.12□□□□□ -0.63
USP40-214ENST00000483519 DOCK11Q5JSL3 2073 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 SCO2A0A1W2PP80 73 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 ZNF503-AS2A6NEH8 195 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 SIAH2O43255 324 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 RPL19P84098 196 aaKnown RBP11.11□□□□□ -0.63
USP40-214ENST00000483519 TRIP6Q15654 476 aaKnown RBP11.11□□□□□ -0.63
USP40-214ENST00000483519 OR2Y1Q8NGV0 311 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 FAM186AA6NE01 2351 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 C15orf62A8K5M9 175 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 CDX4O14627 284 aaPredicted RBP11.11□□□□□ -0.63
USP40-214ENST00000483519 SH2D1BO14796 132 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 STAG3L2P0CL84 134 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 STAG3L3P0CL85 134 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 HNF1AP20823 631 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 OPRK1P41145 380 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 COMPP49747 757 aaPredicted RBP11.11□□□□□ -0.63
USP40-214ENST00000483519 EIF4EBP1Q13541 118 aaPredicted RBP11.11□□□□□ -0.63
USP40-214ENST00000483519 FAM216AQ8WUB2 273 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 SLC35E1Q96K37 410 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 TMEM204Q9BSN7 226 aa11.11□□□□□ -0.63
USP40-214ENST00000483519 EP300Q09472 2414 aaPredicted RBP11.1□□□□□ -0.63
USP40-214ENST00000483519 MYO15AQ9UKN7 3530 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 YLPM1P49750 1951 aaKnown RBP11.1□□□□□ -0.63
USP40-214ENST00000483519 LY6G6EA0A0G2JKS1 128 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 C17orf98A8MV24 154 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 THBS3P49746 956 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 GFRA1P56159 465 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 TGFBR3Q03167 851 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 PDLIM3Q53GG5 364 aaPredicted RBP11.1□□□□□ -0.63
USP40-214ENST00000483519 SPINK9Q5DT21 86 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 C11orf42Q8N5U0 333 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 U3KQA8 63 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 RIF1Q5UIP0 2472 aaKnown RBP11.1□□□□□ -0.63
USP40-214ENST00000483519 SNURFLB1AK76 121 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 NEURL1O76050 574 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 CHRNB4P30926 498 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 FOLR3P41439 243 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 LGALS4P56470 323 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms