RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 A0A0G2JRQ6 117 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 ZNF718Q3SXZ3 478 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 C6orf15Q6UXA7 325 aaPredicted RBP11.48□□□□□ -0.57
USP42-206ENST00000479544 FA2HQ7L5A8 372 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 TMEM251Q8N6I4 163 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 OR1L4Q8NGR5 311 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 SLC25A40Q8TBP6 338 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 WDYHV1Q96HA8 205 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 TMEM208Q9BTX3 173 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 FREM1Q5H8C1 2179 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 EPHA8P29322 1005 aaPredicted RBP11.48□□□□□ -0.57
USP42-206ENST00000479544 SSTR5P35346 364 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 TEPPQ6URK8 271 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 OR2Y1Q8NGV0 311 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 HES4Q9HCC6 221 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 HIF1ANQ9NWT6 349 aa11.48□□□□□ -0.57
USP42-206ENST00000479544 DPRXA6NFQ7 191 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CT45A6P0DMU7 189 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CT45A5P0DMU8 189 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CT45A7P0DMV0 189 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CT45A1Q5HYN5 189 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 Q8IYB0 196 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CARFQ8N187 725 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CT45A3Q8NHU0 189 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 C1orf147Q96MC9 270 aaPredicted RBP11.47□□□□□ -0.57
USP42-206ENST00000479544 NPCDR1Q9BY65 106 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 WNT9BO14905 357 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 GATA2P23769 480 aaPredicted RBP11.47□□□□□ -0.57
USP42-206ENST00000479544 IBA57Q5T440 356 aaKnown RBP11.47□□□□□ -0.57
USP42-206ENST00000479544 FAM90A2PQ658T7 463 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 WDR74Q6RFH5 385 aaPredicted RBP11.47□□□□□ -0.57
USP42-206ENST00000479544 MDP1Q86V88 176 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 RAB37Q96AX2 223 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 DCTN5Q9BTE1 182 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 DENND4CQ5VZ89 1909 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 MARCH11A6NNE9 402 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 SELLP14151 372 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 REG1BP48304 166 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 OR10X1Q8NGY0 326 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 TMEM56Q96MV1 263 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 PSMG3Q9BT73 122 aaPredicted RBP11.47□□□□□ -0.57
USP42-206ENST00000479544 TMEM140Q9NV12 185 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 CLDN16Q9Y5I7 305 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 TMEM56-RWDD3S4R434 201 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 COL4A6Q14031 1691 aa11.47□□□□□ -0.57
USP42-206ENST00000479544 TMSB15BA0A087X1C1 80 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 hCG_38984A0A1B0GV85 526 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 C17orf98A8MV24 154 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 CSRP1P21291 193 aaKnown RBP11.46□□□□□ -0.57
USP42-206ENST00000479544 PMCHL2Q9BQD1 86 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 C2orf88Q9BSF0 95 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 HES7Q9BYE0 225 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 GSX1Q9H4S2 264 aaPredicted RBP11.46□□□□□ -0.57
USP42-206ENST00000479544 DLEU1O43261 78 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 NEURL1O76050 574 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 NPSP0C0P6 89 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 LINC00205P59089 165 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 VWA1Q6PCB0 445 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 Q6ZRM9 215 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 RAB9BQ9NP90 201 aa11.46□□□□□ -0.57
USP42-206ENST00000479544 NPIPB13A6NJU9 1138 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 PATE3B3GLJ2 98 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 NPIPB4C9JG80 1138 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 RAMP3O60896 148 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 CNIH1O95406 144 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 GPR6P46095 362 aaPredicted RBP11.46□□□□□ -0.58
USP42-206ENST00000479544 ARL16Q0P5N6 197 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 RTL8BQ17RB0 113 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 PCED1AQ9H1Q7 454 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 IL36GQ9NZH8 169 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 CLPSP04118 112 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 LYL1P12980 280 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 TNFSF4P23510 183 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 COMPP49747 757 aaPredicted RBP11.46□□□□□ -0.58
USP42-206ENST00000479544 OR8A1Q8NGG7 326 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 MIEN1Q9BRT3 115 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 LOXL2Q9Y4K0 774 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 ARFGEF3Q5TH69 2177 aa11.46□□□□□ -0.58
USP42-206ENST00000479544 VSTM5A8MXK1 200 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 M0R1B8 84 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 SYNGR3O43761 229 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 CGAP01215 116 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 OR8G5Q8NG78 346 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 HS3ST6Q96QI5 342 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 OR8B2Q96RD0 313 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 RNASE7Q9H1E1 156 aaKnown RBP11.45□□□□□ -0.58
USP42-206ENST00000479544 IL19Q9UHD0 177 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 LRRC30A6NM36 301 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 CA1P00915 261 aaPredicted RBP11.45□□□□□ -0.58
USP42-206ENST00000479544 MRPS11P82912 194 aaKnown RBP11.45□□□□□ -0.58
USP42-206ENST00000479544 UNQ5815/PRO19632Q6UWF5 114 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 CPEB3Q8NE35 698 aaKnown RBP11.45□□□□□ -0.58
USP42-206ENST00000479544 TWSG1Q9GZX9 223 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 NPVFQ9HCQ7 196 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 MT-CO3P00414 261 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 CT45A10P0DMU9 189 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 ZNF83P51522 516 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 CENPWQ5EE01 88 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 ZNF355PQ9NSJ1 428 aa11.45□□□□□ -0.58
USP42-206ENST00000479544 DCAF16Q9NXF7 216 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms