RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 AUNIPQ9H7T9 357 aa9.28□□□□□ -0.92
SYNE1-223ENST00000476519 VCX3AQ9NNX9 186 aa9.28□□□□□ -0.92
SYNE1-223ENST00000476519 STAB2Q8WWQ8 2551 aa9.27□□□□□ -0.92
SYNE1-223ENST00000476519 NBEAL2Q6ZNJ1 2754 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 IGKV1D-13A0A0B4J2D9 117 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 XRCC3O43542 346 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 OR9G9P0C7N8 305 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 IGKV1-13P0DP09 117 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 CBX5P45973 191 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 ARPC4P59998 168 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 EIF4EBP1Q13541 118 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-223ENST00000476519 KLF5Q13887 457 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-223ENST00000476519 CDK10Q15131 360 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 TATDN3Q17R31 274 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 ZNF343Q6P1L6 599 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 MMD2Q8IY49 270 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 MFSD4AQ8N468 514 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 ZBTB34Q8NCN2 500 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 ADAD2Q8NCV1 583 aaKnown RBP9.27□□□□□ -0.93
SYNE1-223ENST00000476519 TSPAN14Q8NG11 270 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 VSTM2AQ8TAG5 236 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 SRSF12Q8WXF0 261 aaKnown RBP9.27□□□□□ -0.93
SYNE1-223ENST00000476519 PHB2Q99623 299 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 AIFM2Q9BRQ8 373 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 SMAD5-AS1Q9Y6J3 95 aa9.27□□□□□ -0.93
SYNE1-223ENST00000476519 AIREO43918 545 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 OR2A4O95047 310 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 LY86O95711 162 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 SAA1P0DJI8 122 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-223ENST00000476519 FCGR2CP31995 323 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 KIR2DS2P43631 304 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 RPL30P62888 115 aaKnown RBP9.26□□□□□ -0.93
SYNE1-223ENST00000476519 TNXAQ16473 311 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 C11orf87Q6NUJ2 197 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 IDO2Q6ZQW0 420 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 SLC25A42Q86VD7 318 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 TTC9CQ8N5M4 171 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 OR4S2Q8NH73 311 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 GIMAP1Q8WWP7 306 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 OR2A7Q96R45 310 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 ZNF430Q9H8G1 570 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-223ENST00000476519 COA4Q9NYJ1 87 aa9.26□□□□□ -0.93
SYNE1-223ENST00000476519 PEF1Q9UBV8 284 aaKnown RBP9.26□□□□□ -0.93
SYNE1-223ENST00000476519 TNCP24821 2201 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 FAM223BA6NKX1 122 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 MPPED1O15442 326 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 TNFAIP8O95379 198 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 HRASP01112 189 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 GP9P14770 177 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 SPNP16150 400 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 MAS1LP35410 378 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 RPS19P39019 145 aaKnown RBP9.25□□□□□ -0.93
SYNE1-223ENST00000476519 DYRK1AQ13627 763 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 FAM209BQ5JX69 171 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 FAM223AQ8IWN6 122 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 GVQW1Q8N7I0 195 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 TCTEX1D2Q8WW35 142 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 ACOT12Q8WYK0 555 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 SNAPC3Q92966 411 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 YIPF6Q96EC8 236 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 WWC2-AS2Q96NR7 200 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 TAS2R8Q9NYW2 309 aa9.25□□□□□ -0.93
SYNE1-223ENST00000476519 TRBV9A0A0B4J1U6 114 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 ANKRD34BA5PLL1 514 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 RBFOX2O43251 390 aaKnown RBP eCLIP9.24□□□□□ -0.93
SYNE1-223ENST00000476519 PPYP01298 95 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 BRWD1-AS2P59051 145 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 ATP5G2Q06055 141 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 UBE2NLQ5JXB2 153 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 DHRS11Q6UWP2 260 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 ANKRD13BQ86YJ7 626 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 PUSL1Q8N0Z8 303 aaKnown RBP9.24□□□□□ -0.93
SYNE1-223ENST00000476519 NECAP1Q8NC96 275 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 OR5AP2Q8NGF4 316 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 OR13F1Q8NGS4 319 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 TMEM167AQ8TBQ9 72 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 BORCS5Q969J3 196 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 KCTD12Q96CX2 325 aaKnown RBP9.24□□□□□ -0.93
SYNE1-223ENST00000476519 U3KQK5 164 aa9.24□□□□□ -0.93
SYNE1-223ENST00000476519 KMT2CQ8NEZ4 4911 aaKnown RBP9.24□□□□□ -0.93
SYNE1-223ENST00000476519 HUWE1Q7Z6Z7 4374 aaKnown RBP9.24□□□□□ -0.93
SYNE1-223ENST00000476519 KBTBD11O94819 623 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 IGLV1-51P01701 117 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 APELAP0DMC3 54 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 RHOGP84095 191 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 OR2B11Q5JQS5 317 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 VKORC1L1Q8N0U8 176 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 OR9G4Q8NGQ1 327 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 OR4A5Q8NH83 315 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 CD300LFQ8TDQ1 290 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 SECTM1Q8WVN6 248 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 SLC5A7Q9GZV3 580 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 AKIP1Q9NQ31 210 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 CCL28Q9NRJ3 127 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 SLC2A9Q9NRM0 540 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 SIGLEC8Q9NYZ4 499 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 ZNF257Q9Y2Q1 563 aa9.23□□□□□ -0.93
SYNE1-223ENST00000476519 TRIM64CA6NLI5 447 aa9.22□□□□□ -0.93
SYNE1-223ENST00000476519 NPIPB5A8MRT5 1133 aa9.22□□□□□ -0.93
SYNE1-223ENST00000476519 H0Y980 276 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms