RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SELENOVP59797 346 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 SUMO1P63165 101 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 HERPUD1Q15011 391 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 FDX2Q6P4F2 183 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 PPP1R32Q7Z5V6 425 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 RBMXL3Q8N7X1 1067 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 LFNGQ8NES3 379 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 FLYWCH2Q96CP2 140 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 MSI2Q96DH6 328 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 MISP3Q96FF7 219 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 ABHD17AQ96GS6 310 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 TBX15Q96SF7 602 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 S1PR3Q99500 378 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 FAM173AQ9BQD7 235 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 ACTR3CQ9C0K3 210 aaPredicted RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 PARLQ9H300 379 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 LPAR2Q9HBW0 351 aa4.21□□□□□ -1.73
CCDC39-204ENST00000476379 LIN7CQ9NUP9 197 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 LSM4Q9Y4Z0 139 aaKnown RBP4.21□□□□□ -1.73
CCDC39-204ENST00000476379 hCG_38984A0A1B0GV85 526 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 CD81P60033 236 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 ZFP36L1Q07352 338 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 HMGN3Q15651 99 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 RNASEKQ6P5S7 137 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 MUCL1Q96DR8 90 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 TAAR9Q96RI9 348 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 TMEM140Q9NV12 185 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 ARL2-SNX15V9GYD0 113 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 TRAV3A0A0B4J244 114 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 FBLL1A6NHQ2 334 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 SNURFLB1AK76 121 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 NTN3O00634 580 aaPredicted RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 PSPNO60542 156 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 CD1AP06126 327 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 NBL1P41271 181 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 GPR6P46095 362 aaPredicted RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 B2MP61769 119 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 RANP62826 216 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 SRPXP78539 464 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 ZP4Q12836 540 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 LEMD1Q68G75 181 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 SPACA3Q8IXA5 215 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OR8I2Q8N0Y5 310 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OR10A7Q8NGE5 316 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 NABP1Q96AH0 204 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 SMIM8Q96KF7 97 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 QTRT1Q9BXR0 403 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 BAHCC1Q9P281 2608 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 APOA2P02652 100 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 SRP19P09132 144 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 ACP1P24666 158 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OPRK1P41145 380 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OR2D3Q8NGH3 330 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OR13A1Q8NGR1 328 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 OR2T10Q8NGZ9 312 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 WBP1Q96G27 269 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 HSPB9Q9BQS6 159 aa4.21□□□□□ -1.74
CCDC39-204ENST00000476379 REPIN1Q9BWE0 567 aaKnown RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 LYRM2Q9NU23 88 aaPredicted RBP4.21□□□□□ -1.74
CCDC39-204ENST00000476379 TEX15Q9BXT5 2789 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 FN1P02751 2386 aaKnown RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 IGKV1-6A0A0C4DH72 117 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 A0A0U1RQV5 110 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 SERTM2A0A1B0GWG4 89 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ODAMA1E959 279 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 TCAPO15273 167 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 SRSF10O75494 262 aaKnown RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ARL14EPLP0DKL9 152 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 RPL30P62888 115 aaKnown RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 PMCHL1Q16048 86 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 Q56UQ5 140 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 PET117Q6UWS5 81 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 Q6ZVH6 145 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 C17orf82Q86X59 251 aaPredicted RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 TMEM256Q8N2U0 113 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ZNF441Q8N8Z8 693 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ZCCHC14Q8WYQ9 949 aaKnown RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 TECTBQ96PL2 329 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 DCAF16Q9NXF7 216 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 COA4Q9NYJ1 87 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 TRAV24A0A0B4J272 114 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 SCO2A0A1W2PP80 73 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 CBY3A6NI87 242 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 PRSS47A8MTI9 375 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 C12orf77C9JDV5 145 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 LYNX1G3V0Z9 82 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 SLC31A2O15432 143 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 CST2P09228 141 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 LYNX1P0DP58 116 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 FGF12P61328 243 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 MEF2BQ02080 365 aaPredicted RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 NAAAQ02083 359 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 FOXF2Q12947 444 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ICAM4Q14773 271 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 ELOBQ15370 118 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 C10orf55Q5SWW7 151 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 SPATA31B1PQ5VZV4 182 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 DUX4L9Q6RFH8 374 aaPredicted RBP4.2□□□□□ -1.74
CCDC39-204ENST00000476379 KMT5CQ86Y97 462 aa4.2□□□□□ -1.74
CCDC39-204ENST00000476379 WFDC3Q8IUB2 231 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms