RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 CRYZL1O95825 349 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 SRMP19623 302 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 TAGLNQ01995 201 aaKnown RBP13.55□□□□□ -0.24
SHH-205ENST00000472308 CBX3Q13185 183 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 C1orf100Q5SVJ3 147 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 FANCD2OSQ96PS1 177 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 LPAR5Q9H1C0 372 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 FBXL17Q9UF56 701 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 ZNF257Q9Y2Q1 563 aa13.55□□□□□ -0.24
SHH-205ENST00000472308 SAA1P0DJI8 122 aaPredicted RBP13.54□□□□□ -0.24
SHH-205ENST00000472308 RPL35AP18077 110 aaKnown RBP13.54□□□□□ -0.24
SHH-205ENST00000472308 MYL12AP19105 171 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 MAP2K4P45985 399 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 INSL4Q14641 139 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 RBMS2Q15434 407 aaKnown RBP13.54□□□□□ -0.24
SHH-205ENST00000472308 FAM106AQ4KMX7 169 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 GLT8D1Q68CQ7 371 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 OR4A47Q6IF82 309 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 RBPMS2Q6ZRY4 209 aaKnown RBP13.54□□□□□ -0.24
SHH-205ENST00000472308 LRRTM1Q86UE6 522 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 APLNQ9ULZ1 77 aa13.54□□□□□ -0.24
SHH-205ENST00000472308 LINC00473A8K010 186 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 TRDCB7Z8K6 153 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 RRASP10301 218 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 C11orf45Q8TAV5 145 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 C2CD4CQ8TF44 421 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 SPAG8Q99932 426 aaPredicted RBP13.53□□□□□ -0.24
SHH-205ENST00000472308 MAP6D1Q9H9H5 199 aa13.53□□□□□ -0.24
SHH-205ENST00000472308 A0A1B0GW64 132 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 DUTP33316 252 aaKnown RBP13.52□□□□□ -0.25
SHH-205ENST00000472308 TMEM50BP56557 158 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 TCTAP57738 103 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 CDK10Q15131 360 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 ZNF585BQ52M93 769 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 IGSF11Q5DX21 431 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 SLC25A42Q86VD7 318 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 SLC38A6Q8IZM9 456 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 FAM89BQ8N5H3 189 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 GVQW1Q8N7I0 195 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 MARC2Q969Z3 335 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 MFFQ9GZY8 342 aa13.52□□□□□ -0.25
SHH-205ENST00000472308 C11orf68Q9H3H3 251 aaKnown RBP13.52□□□□□ -0.25
SHH-205ENST00000472308 NPIPB5A8MRT5 1133 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 E7EUB6 86 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 BET1O15155 118 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 XRCC3O43542 346 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 ACTL6BO94805 426 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 IFNA4P05014 189 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 SERPINB10P48595 397 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 MMD2Q8IY49 270 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 OR4A4PQ8NGN8 299 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 OSR1Q8TAX0 266 aaPredicted RBP13.51□□□□□ -0.25
SHH-205ENST00000472308 CABLES2Q9BTV7 478 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 C5orf66Q9H5L9 145 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 MRPL27Q9P0M9 148 aaKnown RBP13.51□□□□□ -0.25
SHH-205ENST00000472308 HSF4Q9ULV5 492 aa13.51□□□□□ -0.25
SHH-205ENST00000472308 TSPAN4O14817 238 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 IL6RP08887 468 aaPredicted RBP13.5□□□□□ -0.25
SHH-205ENST00000472308 CELP19835 753 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 MAPK3P27361 379 aaPredicted RBP13.5□□□□□ -0.25
SHH-205ENST00000472308 TAS2R43P59537 309 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 KLK9Q2XQG4 91 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 EEF1AKMT3Q96AZ1 226 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 TMEM80Q96HE8 168 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 ARHGAP5-AS1Q96IT6 56 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 KLK9Q9UKQ9 250 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 HERC1Q15751 4861 aa13.5□□□□□ -0.25
SHH-205ENST00000472308 TRBV6-7A0A0A0MS04 114 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 IRGMA1A4Y4 181 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 MFSD2BA6NFX1 497 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 FABP7O15540 132 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 CREBL2O60519 120 aaPredicted RBP13.49□□□□□ -0.25
SHH-205ENST00000472308 BPNT1O95861 308 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 CD1AP06126 327 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 CRYGCP07315 174 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 CD37P11049 281 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 AREGP15514 252 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 GALP22466 123 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 GALNT14Q96FL9 552 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 RARRES2Q99969 163 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 CMSS1Q9BQ75 279 aaKnown RBP13.49□□□□□ -0.25
SHH-205ENST00000472308 PECRQ9BY49 303 aa13.49□□□□□ -0.25
SHH-205ENST00000472308 IGHV3-35A0A0C4DH35 117 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 CLEC3BP05452 202 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 TPBGQ13641 420 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 PLAC9Q5JTB6 97 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 TTC23Q5W5X9 447 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 SETD9Q8NE22 299 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 OR5B3Q8NH48 314 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 ADTRPQ96IZ2 230 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 FYTTD1Q96QD9 318 aaKnown RBP13.48□□□□□ -0.25
SHH-205ENST00000472308 SLC2A9Q9NRM0 540 aa13.48□□□□□ -0.25
SHH-205ENST00000472308 IGLL5B9A064 214 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 RTL8CO15255 209 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 ZNF735P0CB33 412 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 GSTT2P0CG29 244 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 GSTT2BP0CG30 244 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 PSMB6P28072 239 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 MFAP2P55001 183 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 ELLP55199 621 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms