RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ERVK11-1P61568 191 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 PRR31Q5SQ13 230 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 WDR25Q64LD2 544 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 MBD3L2Q8NHZ7 208 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 SPENQ96T58 3664 aaKnown RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 SMIM7Q9BQ49 75 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 ARV1Q9H2C2 271 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 TMEM140Q9NV12 185 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 KPTNQ9Y664 436 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 DSCAMO60469 2012 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 FGF16O43320 207 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 PAGE4O60829 102 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 SGK494Q96LW2 274 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 SMCO4Q9NRQ5 59 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 H3BQ15 152 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 PITX3O75364 302 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 CHRNA7P36544 502 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 NDUFA6P56556 154 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 DIAPH2-AS1Q14236 149 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 NCMAPQ5T1S8 102 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 C1orf87Q8N0U7 546 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM216AQ8WUB2 273 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 TVP23CQ96ET8 276 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 HILPDAQ9Y5L2 63 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 PPIAL4EA0A075B759 164 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 PPIAL4DF5H284 164 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 GAPDHP04406 335 aaKnown RBP11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 PPIAL4FP0DN26 164 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 TAS2R30P59541 319 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SRSF4Q08170 494 aaKnown RBP11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 KRTCAP3Q53RY4 240 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SLC35E4Q6ICL7 350 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 C5orf30Q96GV9 206 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SMIM8Q96KF7 97 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SNX22Q96L94 193 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 OR6C3Q9NZP0 311 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 NDRG3Q9UGV2 375 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 GAB2Q9UQC2 676 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 PPIAL4AQ9Y536 164 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SAA2-SAA4A0A096LPE2 208 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 PGPEP1LA6NFU8 196 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 RRHO14718 337 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 ZNF737O75373 536 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SAA2P0DJI9 122 aaPredicted RBP11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 MORN2Q502X0 79 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 FRZBQ92765 325 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 SRRM5B3KS81 715 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 CD3EP07766 207 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 C19orf35Q6ZS72 473 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 LINC00596Q86U02 117 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 OR10W1Q8NGF6 305 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 HARBI1Q96MB7 349 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 COMMD5Q9GZQ3 224 aa11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 TNRC6BQ9UPQ9 1833 aaKnown RBP11.39□□□□□ -0.59
CCDC88A-211ENST00000471947 LOC105371267A0A1B0GV96 52 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CYB5BO43169 146 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 OR7C2O60412 319 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 IGKV1-16P04430 117 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 RAB5BP61020 215 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 DLK1P80370 383 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 RTP5Q14D33 572 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 OR51G1Q8NGK1 321 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 HSD17B10Q99714 261 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 SFXN3Q9BWM7 321 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 NGBQ9NPG2 151 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CDK2AP1O14519 115 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 OR10J4P0C629 311 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 ARF6P62330 175 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 HFEQ30201 348 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 ASPHD1Q5U4P2 390 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 TAF15Q92804 592 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 RAB39BQ96DA2 213 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 RCC1LQ96I51 464 aaKnown RBP11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 SEC11CQ9BY50 192 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CGAP01215 116 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CCKARP32238 428 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CT45A1Q5HYN5 189 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 Q6ZSR3 168 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 CT45A3Q8NHU0 189 aa11.38□□□□□ -0.59
CCDC88A-211ENST00000471947 A0A1W2PPQ1 181 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 HMGN3Q15651 99 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 ADIPOQQ15848 244 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 UQCC3Q6UW78 93 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 SLC25A17O43808 307 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 OR5G3P0C626 314 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 CDKN1AP38936 164 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 LRRC10Q5BKY1 277 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 ZNF525Q8N782 197 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 PLEKHA3Q9HB20 300 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 BIN3Q9NQY0 253 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 hADV38S2A0JD32 116 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 CD200P41217 278 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 GINS3Q9BRX5 216 aa11.37□□□□□ -0.59
CCDC88A-211ENST00000471947 IGHV3OR16-10A0A075B7F0 116 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 IGHV3-35A0A0C4DH35 117 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 IGLV2-14P01704 120 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 S100A9P06702 114 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 SSX7Q7RTT5 188 aa11.36□□□□□ -0.59
CCDC88A-211ENST00000471947 HAPLN4Q86UW8 402 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms