RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZNF404Q494X3 552 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ZFP69Q49AA0 526 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 CLLU1Q5K131 121 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 MUC21Q5SSG8 566 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 FKBP1CQ5VVH2 108 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 AMMECR1LQ6DCA0 310 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM53AQ6NSI3 398 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ACP7Q6ZNF0 438 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 MOB1BQ7L9L4 216 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ATP5L2Q7Z4Y8 100 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 TRPT1Q86TN4 253 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 C17orf82Q86X59 251 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 C9orf40Q8IXQ3 194 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 MMGT1Q8N4V1 131 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 OR4C16Q8NGL9 310 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 OR10G8Q8NGN5 311 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 OR2A12Q8NGT7 310 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 DEDD2Q8WXF8 326 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 NABP1Q96AH0 204 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 SOSTQ9BQB4 213 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 MOB1AQ9H8S9 216 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 CXorf21Q9HAI6 301 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 RPUSD1Q9UJJ7 312 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ANAPC10Q9UM13 185 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 CYSLTR1Q9Y271 337 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 PCYT1BQ9Y5K3 369 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ADGRL2O95490 1459 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ZFYVE16Q7Z3T8 1539 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 WNK3Q9BYP7 1800 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV3OR16-13A0A075B7E8 117 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 A0A0J9YXV3 536 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 TRDV1A0A1B0GX56 115 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 CLDN25C9JDP6 229 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 LY6LH3BQJ8 138 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PIRO00625 290 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 ISLRO14498 428 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 ANGPTL7O43827 346 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 SRSF10O75494 262 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 SNAPC5O75971 98 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 TSHBP01222 138 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 IGLV1-44P01699 117 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHG1P01857 330 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 CD48P09326 243 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF728P0DKX0 622 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PPIBP23284 216 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 FKBP2P26885 142 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 BTCP35070 178 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 TAS2R46P59540 309 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PPP1CAP62136 330 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 DHRS2Q13268 280 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PRR30Q53SZ7 412 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 Q6Q795 121 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 UNQ9165/PRO28630Q6UXU0 137 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 TEX43Q6ZNM6 134 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 GTF2H5Q6ZYL4 71 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 GKN2Q86XP6 184 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PACRGLQ8N7B6 248 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 FER1L6-AS1Q8NA97 138 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 OR11H7Q8NGC8 314 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 OR52P1PQ8NH57 321 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 SLC25A40Q8TBP6 338 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 LMX1AQ8TE12 382 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 OR4C12Q96R67 309 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 NMNAT3Q96T66 252 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC01587Q99440 93 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 PAXXQ9BUH6 204 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 SFXN3Q9BWM7 321 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 EIF5A2Q9GZV4 153 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 EDA2RQ9HAV5 297 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF629Q9UEG4 869 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC00527Q9UJ94 153 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 AMMECR1Q9Y4X0 333 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 SOX21Q9Y651 276 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 TDRD15B5MCY1 1934 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 ARHGEF11O15085 1522 aa3.63□□□□□ -1.83
CCDC88A-210ENST00000468534 DENND4AQ7Z401 1863 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 PZPP20742 1482 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 TRAV8-1A0A0A6YYK1 113 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV2-26A0A0B4J1V2 119 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 LOC389332A0A1B0GUA5 103 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 GGT3PA6NGU5 568 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM220BPB1ANY3 271 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 GGTLC3B5MD39 225 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 PHOX2AO14813 284 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 AGPAT2O15120 278 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 NXPH4O95158 308 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR12D1P0DN82 309 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 VDAC2P45880 294 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 S100A10P60903 97 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 RPS11P62280 158 aaKnown RBP eCLIP3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 RPS21P63220 83 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 CST6Q15828 149 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF141Q15928 474 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 CCL14Q16627 93 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 C6orf99Q4VX62 202 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 ABCA11PQ4W5N1 156 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 TCEAL5Q5H9L2 206 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 LYRM7Q5U5X0 104 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM244Q5VVB8 128 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM14EPQ6UXP3 125 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms