RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 NIPSNAP3BQ9BS92 247 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 ZNF2Q9BSG1 426 aaPredicted RBP6.43□□□□□ -1.38
USP4-207ENST00000462673 FGF23Q9GZV9 251 aaPredicted RBP6.43□□□□□ -1.38
USP4-207ENST00000462673 PRDM13Q9H4Q3 707 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 BANF2Q9H503 90 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 LPAR2Q9HBW0 351 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 NECAP2Q9NVZ3 263 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 DOK5Q9P104 306 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 RCL1Q9Y2P8 373 aaKnown RBP6.43□□□□□ -1.38
USP4-207ENST00000462673 KCNIP3Q9Y2W7 256 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 MMP24Q9Y5R2 645 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 INSIG2Q9Y5U4 225 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 PUS1Q9Y606 427 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP4-207ENST00000462673 TEX15Q9BXT5 2789 aa6.43□□□□□ -1.38
USP4-207ENST00000462673 TANC2Q9HCD6 1990 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 IGKV1D-17A0A075B6S4 117 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 IGHV2-70DA0A0C4DH43 119 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 SMCO3A2RU48 225 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 RBFOX3A6NFN3 312 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 H3BQ15 152 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 ST8SIA3O43173 380 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 OR7C1O76099 320 aaPredicted RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 TOX4O94842 621 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 SCAF4O95104 1147 aaKnown RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 MBPP02686 304 aaPredicted RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 RD3LP0DJH9 198 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 ZNF728P0DKX0 622 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 GZMHP20718 246 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 DTYMKP23919 212 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 BLVRBP30043 206 aaPredicted RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 IL2RGP31785 369 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 TAGLN2P37802 199 aaKnown RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 TMEM50BP56557 158 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 SPCS3P61009 180 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 HERV-K104P61576 105 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 RPL31P62899 125 aaKnown RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 EWSR1Q01844 656 aaKnown RBP eCLIP6.42□□□□□ -1.38
USP4-207ENST00000462673 PNRC1Q12796 327 aaPredicted RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 TMEM187Q14656 261 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 GNMTQ14749 295 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 CR1LQ2VPA4 569 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 KHDC3LQ587J8 217 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 LIAT1Q6ZQX7 453 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 HSD17B11Q8NBQ5 300 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 OR10G4Q8NGN3 311 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 OR10D4PQ8NGN7 298 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 Q8WTZ3 238 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 GNPNAT1Q96EK6 184 aaPredicted RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 C14orf144Q96I85 54 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 ZNF488Q96MN9 340 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 SSX3Q99909 188 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 C2orf88Q9BSF0 95 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 DCTN5Q9BTE1 182 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 ST6GALNAC5Q9BVH7 336 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 SLC25A31Q9H0C2 315 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 NCOR1P1Q9H4R4 102 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 OR6C3Q9NZP0 311 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 RPUSD1Q9UJJ7 312 aaKnown RBP6.42□□□□□ -1.38
USP4-207ENST00000462673 CSMD1Q96PZ7 3565 aa6.42□□□□□ -1.38
USP4-207ENST00000462673 CCDC168Q8NDH2 2452 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 A0A087X0M5 115 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 TRGV10A0A0A0MS01 117 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 A0A1B0GV90 55 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 A0A1B0GX30 115 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 DUXBA0A1W2PPF3 345 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 IFITM10A6NMD0 228 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 M0R1W7 72 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BKO60814 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 CDS2O95674 445 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 OR2H2O95918 312 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BJP06899 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 SRP19P09132 144 aaKnown RBP6.41□□□□□ -1.38
USP4-207ENST00000462673 ZNF16P17020 682 aaPredicted RBP6.41□□□□□ -1.38
USP4-207ENST00000462673 SRD5A1P18405 259 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 FUT3P21217 361 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BOP23527 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 ZFP36P26651 326 aaKnown RBP6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BBP33778 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 GLIPR1P48060 266 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 EDDM3BP56851 147 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 PIGPP57054 158 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BDP58876 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BCP62807 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 DLK1P80370 383 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 PAX8Q06710 450 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 BAXQ07812 192 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 ELOBQ15370 118 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST2H2BEQ16778 126 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.41□□□□□ -1.38
USP4-207ENST00000462673 FAM120AOSQ5T036 256 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 AKR1C8PQ5T2L2 129 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 NCR3LG1Q68D85 454 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 FAM185AQ8N0U4 392 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 CD177Q8N6Q3 437 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 KIR3DL3Q8N743 410 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 FAM216BQ8N7L0 139 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 LY6G5BQ8NDX9 201 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 C8orf46Q8TAG6 207 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 NEK7Q8TDX7 302 aa6.41□□□□□ -1.38
USP4-207ENST00000462673 HIST1H2BHQ93079 126 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms