RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 A0A1W2PR64 198 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 A0A1W2PRV1 198 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 ZNF729A6NN14 1252 aaPredicted RBP12.44□□□□□ -0.42
LDLR-202ENST00000455727 SLC31A2O15432 143 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 MEOX2P50222 304 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 CTAG1AP78358 180 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 RELBQ01201 579 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 OR10G9Q8NGN4 311 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 OR10G7Q8NGN6 311 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 GGACTQ9BVM4 153 aa12.44□□□□□ -0.42
LDLR-202ENST00000455727 C5orf52A6NGY3 159 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 CYB5R3P00387 301 aaPredicted RBP12.43□□□□□ -0.42
LDLR-202ENST00000455727 IRF2P14316 349 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 VDAC2P45880 294 aaPredicted RBP12.43□□□□□ -0.42
LDLR-202ENST00000455727 THBS3P49746 956 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 OR2B8PP59922 312 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 SPINK9Q5DT21 86 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 FFAR4Q5NUL3 377 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 ADTRPQ96IZ2 230 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 ACTR3CQ9C0K3 210 aaPredicted RBP12.43□□□□□ -0.42
LDLR-202ENST00000455727 TMEM242Q9NWH2 141 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 JKAMPQ9P055 326 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 WDR83OSQ9Y284 106 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 ICE1Q9Y2F5 2266 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 TMPRSS3P57727 454 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 TFF3Q07654 80 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 ADAM5Q6NVV9 412 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 C1orf229Q6ZS94 237 aaPredicted RBP12.43□□□□□ -0.42
LDLR-202ENST00000455727 ZNF439Q8NDP4 499 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 TP53TG5Q9Y2B4 290 aa12.43□□□□□ -0.42
LDLR-202ENST00000455727 ZGRF1Q86YA3 2104 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 CEP250Q9BV73 2442 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 MPDU1O75352 247 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 TNFRSF1AP19438 455 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 CD1BP29016 333 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 SSX9Q7RTT3 188 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 TCF23Q7RTU1 214 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 Q8NA96 180 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 TMEM140Q9NV12 185 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 IDI2-AS1Q9NZ38 188 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 ZNF835Q9Y2P0 537 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 TET2Q6N021 2002 aaPredicted RBP12.42□□□□□ -0.42
LDLR-202ENST00000455727 TRGV8A0A0C4DH27 118 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 ZNF727A8MUV8 499 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 IGHV3-7P01780 117 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 S100A6P06703 90 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 SNRPEP62304 92 aaKnown RBP12.42□□□□□ -0.42
LDLR-202ENST00000455727 MEF2BQ02080 365 aaPredicted RBP12.42□□□□□ -0.42
LDLR-202ENST00000455727 DUX4L9Q6RFH8 374 aaPredicted RBP12.42□□□□□ -0.42
LDLR-202ENST00000455727 CISD2Q8N5K1 135 aaKnown RBP12.42□□□□□ -0.42
LDLR-202ENST00000455727 Q8N7P7 452 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 CCL13Q99616 98 aa12.42□□□□□ -0.42
LDLR-202ENST00000455727 GVINP1Q7Z2Y8 2422 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 SAA2-SAA4A0A096LPE2 208 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 DPRXA6NFQ7 191 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 UBE2CO00762 179 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 CYB5BO43169 146 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 SAA2P0DJI9 122 aaPredicted RBP12.41□□□□□ -0.42
LDLR-202ENST00000455727 ELOBQ15370 118 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 UTF1Q5T230 341 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 DEFB108BQ8NET1 73 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 SDF2L1Q9HCN8 221 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 HEYLQ9NQ87 328 aaPredicted RBP12.41□□□□□ -0.42
LDLR-202ENST00000455727 MANBALQ9NQG1 85 aa12.41□□□□□ -0.42
LDLR-202ENST00000455727 RP1L1Q8IWN7 2480 aaPredicted RBP12.41□□□□□ -0.42
LDLR-202ENST00000455727 C17orf100A8MU93 164 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 TMEM250H0YL14 139 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 GFRA3O60609 400 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 EIF3GO75821 320 aaKnown RBP eCLIP12.4□□□□□ -0.42
LDLR-202ENST00000455727 IFNA10P01566 189 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 GYPAP02724 150 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 PSMB3P49720 205 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 CD81P60033 236 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 RPS16P62249 146 aaKnown RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 MRPS11P82912 194 aaKnown RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 ADIPOQQ15848 244 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 POU2AF1Q16633 256 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 ACOT6Q3I5F7 207 aaPredicted RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 WDR25Q64LD2 544 aaPredicted RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 VKORC1L1Q8N0U8 176 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 LEAP2Q969E1 77 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 RAB24Q969Q5 203 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 SLC25A22Q9H936 323 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 NBEAQ8NFP9 2946 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 LAMA5O15230 3695 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 C15orf61A6NNL5 157 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 PRSS46E5RG02 174 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 S100A12P80511 92 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 HNF4GQ14541 408 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 TMEM249Q2WGJ8 235 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 GFRALQ6UXV0 394 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 WFDC8Q8IUA0 241 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 OR10A7Q8NGE5 316 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 RHOVQ96L33 236 aa12.4□□□□□ -0.42
LDLR-202ENST00000455727 METTL1Q9UBP6 276 aaKnown RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 RPUSD1Q9UJJ7 312 aaKnown RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 FOXA2Q9Y261 457 aaPredicted RBP12.4□□□□□ -0.42
LDLR-202ENST00000455727 TRAV3A0A0B4J244 114 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 hADV38S2A0JD32 116 aa12.39□□□□□ -0.43
LDLR-202ENST00000455727 SEC14L6B5MCN3 397 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms