RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 NEU1Q99519 415 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 MMP9P14780 707 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 PGLYRP4Q96LB8 373 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 OR4C12Q96R67 309 aa10.37□□□□□ -0.75
CCDC88A-207ENST00000436346 DNLZQ5SXM8 178 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 ISOC2Q96AB3 205 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 SSBP3Q9BWW4 388 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM238LA0A1B0GVL6 79 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 A6NJY4 79 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 H3BQ15 152 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 ZNF253O75346 499 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 PRSS27Q9BQR3 290 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 HOGA1Q86XE5 327 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM222Q9H0R3 208 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 ZNF430Q9H8G1 570 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 FCARP24071 287 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 PCSK4Q6UW60 755 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 MMP16P51512 607 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 NANOS3P60323 173 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 MMD2Q8IY49 270 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 GALNT14Q96FL9 552 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 CX3CL1P78423 397 aa10.36□□□□□ -0.75
CCDC88A-207ENST00000436346 FOXH1O75593 365 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 MFAP4P55083 255 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 IDI2-AS1Q9NZ38 188 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 RALYQ9UKM9 306 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 AGRNO00468 2067 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 TMEM262E9PQX1 116 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 TTRP02766 147 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 BCL2P10415 239 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 NUTF2P61970 127 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 OR10J1P30954 320 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 TSPAN2O60636 221 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ACAA1P09110 424 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ABHD12Q8N2K0 398 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 V9GYH0 126 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 MOSPD3O75425 235 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ANOS1P23352 680 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ZNF343Q6P1L6 599 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 VN1R17PQ8TDU5 208 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 LHFPL6Q9Y693 200 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ELOA3CA0A087WX78 387 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 ACSF3Q4G176 576 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 FAM209AQ5JX71 171 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 CFHR5Q9BXR6 569 aa10.35□□□□□ -0.75
CCDC88A-207ENST00000436346 LOC102724200A0A096LPH7 203 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 SSTR5P35346 364 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 C2orf83Q53S99 150 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 MRPL30Q8TCC3 161 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 NPVFQ9HCQ7 196 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 AP4M1O00189 453 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 WDR25Q64LD2 544 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 NOTCH2Q04721 2471 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 IGHV3-48P01763 117 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 EMP1P54849 157 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 HIST1H1AQ02539 215 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 GPR82Q96P67 336 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 CHRNA10Q9GZZ6 450 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 GEMIN7Q9H840 131 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 PSMB11A5LHX3 300 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 NPFFO15130 113 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 CIRBPQ14011 172 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 ITLN2Q8WWU7 325 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 ST6GAL2Q96JF0 529 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 KLK15Q9H2R5 256 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 PLAC1Q9HBJ0 212 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 ATG2AQ2TAZ0 1938 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 A8MWL6 223 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 IGHV3-23P01764 117 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 KBTBD11O94819 623 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 PCOLCEQ15113 449 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 Q6ZT83 130 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 CBY1Q9Y3M2 126 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 FAM74A7A6NL05 159 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 TRGV3P03979 118 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 ZP4Q12836 540 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 FXYD3Q14802 87 aa10.34□□□□□ -0.75
CCDC88A-207ENST00000436346 DIRC3C9JPN6 131 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 SGMS2Q8NHU3 365 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 PRSS2P07478 247 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 COX19Q49B96 90 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 IBA57Q5T440 356 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 RHOVQ96L33 236 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 HS3ST3B1Q9Y662 390 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 MIC13Q5XKP0 118 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 ANKHD1Q8IWZ3 2542 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 CEACAM1P13688 526 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 OR11H7Q8NGC8 314 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 GPHA2Q96T91 129 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 NPIPB11E5RHQ5 1161 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 DXOO77932 396 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 PTGDSP41222 190 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 UQCRFS1P47985 274 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 RND2P52198 227 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 DOPEY1Q5JWR5 2465 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHV3-66A0A0C4DH42 116 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 TIAF1O95411 115 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 SELENOTP62341 195 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 CBLN2Q8IUK8 224 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 PILRAQ9UKJ1 303 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms