RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CXorf67Q86X51 503 aaPredicted RBP9.42□□□□□ -0.9
USP4-205ENST00000431357 OR13A1Q8NGR1 328 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 OR1P1Q8NH06 330 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 OR52E5Q8NH55 327 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 TRIB1Q96RU8 372 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 TXNDC17Q9BRA2 123 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 PSG11Q9UQ72 335 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 LINC00473A8K010 186 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 C15orf62A8K5M9 175 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 C11orf94C9JXX5 98 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 C15orf65H3BRN8 121 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 RPLP1P05386 114 aaKnown RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 SP9P0CG40 484 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 GZMHP20718 246 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 CD1BP29016 333 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 TNFSF10P50591 281 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 RBX1P62877 108 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 PMP22Q01453 160 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 HES3Q5TGS1 186 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 PRAMEF6Q5VXH4 476 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 CDPF1Q6NVV7 123 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 Q6ZR03 302 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 CISD2Q8N5K1 135 aaKnown RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 OR5T1Q8NG75 326 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 OR2T10Q8NGZ9 312 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 TMEM170AQ8WVE7 144 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 WDFY3Q8IZQ1 3526 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 F6UZH7 168 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 CDX4O14627 284 aaPredicted RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 SSTR5P35346 364 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 GPR12P47775 334 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 LCN2P80188 198 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 FOXF2Q12947 444 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 MBNL2Q5VZF2 373 aaKnown RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 DHRS13Q6UX07 377 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 FAM90A1Q86YD7 464 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 GCNT2Q8N0V5 402 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 NECAP1Q8NC96 275 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 PPP1R35Q8TAP8 253 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 GATAD1Q8WUU5 269 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 QTRT1Q9BXR0 403 aaKnown RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 KCNIP2Q9NS61 270 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 OR6C3Q9NZP0 311 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 JPT1Q9UK76 154 aa9.41□□□□□ -0.9
USP4-205ENST00000431357 COLQQ9Y215 455 aaPredicted RBP9.41□□□□□ -0.9
USP4-205ENST00000431357 CHD3Q12873 2000 aaKnown RBP9.4□□□□□ -0.9
USP4-205ENST00000431357 TRIOBPQ9H2D6 2365 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 TMPRSS2O15393 492 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 RBFOX2O43251 390 aaKnown RBP eCLIP9.4□□□□□ -0.93e-6■■■■□ 21.5
USP4-205ENST00000431357 PRDX2P32119 198 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 DUTP33316 252 aaKnown RBP9.4□□□□□ -0.9
USP4-205ENST00000431357 PDLIM4P50479 330 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 PDLIM3Q53GG5 364 aaPredicted RBP9.4□□□□□ -0.9
USP4-205ENST00000431357 FAM53AQ6NSI3 398 aaPredicted RBP9.4□□□□□ -0.9
USP4-205ENST00000431357 CNEP1R1Q8N9A8 125 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 IMMP2LQ96T52 175 aa9.4□□□□□ -0.9
USP4-205ENST00000431357 IGHV3-43A0A0B4J1X8 118 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 A0A1W2PPV4 95 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 XKRY2A2RUG3 117 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 AQP7O14520 342 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 EREGO14944 169 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 YPEL1O60688 119 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 AGFG2O95081 481 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 IGHV3-43DP0DP04 118 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 OPRK1P41145 380 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 KIR2DS2P43631 304 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 ERVK-16P61578 105 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 ACTL10Q5JWF8 245 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 Q8N7P7 452 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 OR4A16Q8NH70 328 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 RFESDQ8TAC1 157 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 YPEL2Q96QA6 119 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 PCGF1Q9BSM1 259 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 SNHG12Q9BXW3 62 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 METRNQ9UJH8 293 aa9.4□□□□□ -0.91
USP4-205ENST00000431357 GCGP01275 180 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 IGLV1-44P01699 117 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 NPSP0C0P6 89 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 OR9G9P0C7N8 305 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 CECR9P0C854 216 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 CD82P27701 267 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 KIR2DL2P43627 348 aaPredicted RBP9.39□□□□□ -0.91
USP4-205ENST00000431357 TMPRSS3P57727 454 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 RPS16P62249 146 aaKnown RBP9.39□□□□□ -0.91
USP4-205ENST00000431357 TLE1Q04724 770 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 CR1LQ2VPA4 569 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 ATP1A1-AS1Q5TC04 95 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 PRAMEF5Q5TYX0 476 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 TMPRSS7Q7RTY8 843 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 CD177Q8N6Q3 437 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 LRRC29Q8WV35 223 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 ATG101Q9BSB4 218 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 CHODLQ9H9P2 273 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 MED13Q9UHV7 2174 aa9.39□□□□□ -0.91
USP4-205ENST00000431357 DEFB108AA8MXU0 73 aa9.38□□□□□ -0.91
USP4-205ENST00000431357 MGST3O14880 152 aa9.38□□□□□ -0.91
USP4-205ENST00000431357 FCGR3BO75015 233 aa9.38□□□□□ -0.91
USP4-205ENST00000431357 AMBPP02760 352 aa9.38□□□□□ -0.91
USP4-205ENST00000431357 BMI1P35226 326 aa9.38□□□□□ -0.91
USP4-205ENST00000431357 FABP6P51161 128 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms