RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 IFITM5A6NNB3 132 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 RAB27BO00194 218 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 BMPR1BO00238 502 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 OR2J3O76001 311 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 TPPPO94811 219 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 RAB6AP20340 208 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 ZNF45Q02386 682 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 TBCEQ15813 527 aaPredicted RBP11.02□□□□□ -0.65
SDC1-204ENST00000429035 SSX1Q16384 188 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 MRGPRG-AS1Q2M3A8 158 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 FAM223AQ8IWN6 122 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 ZNF645Q8N7E2 425 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 OSR1Q8TAX0 266 aaPredicted RBP11.02□□□□□ -0.65
SDC1-204ENST00000429035 DDB2Q92466 427 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 ELF5Q9UKW6 265 aaPredicted RBP11.02□□□□□ -0.65
SDC1-204ENST00000429035 MRPS7Q9Y2R9 242 aaKnown RBP11.02□□□□□ -0.65
SDC1-204ENST00000429035 CEPT1Q9Y6K0 416 aa11.02□□□□□ -0.65
SDC1-204ENST00000429035 LYSTQ99698 3801 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 DPPA5A6NC42 116 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 PPP5D1E7EU14 171 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 DIRAS3O95661 229 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 CD36P16671 472 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 NFYAP23511 347 aaPredicted RBP11.01□□□□□ -0.65
SDC1-204ENST00000429035 CDK10Q15131 360 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 GUCA2BQ16661 112 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 CD300EQ496F6 205 aaPredicted RBP11.01□□□□□ -0.65
SDC1-204ENST00000429035 C22orf42Q6IC83 251 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 MMD2Q8IY49 270 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 SPIN2AQ99865 258 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 SPIN2BQ9BPZ2 258 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 NEURL2Q9BR09 285 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 THAP7Q9BT49 309 aaPredicted RBP11.01□□□□□ -0.65
SDC1-204ENST00000429035 ST6GALNAC5Q9BVH7 336 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 WFDC10AQ9H1F0 79 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 SLC2A8Q9NY64 477 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 PRELID3BQ9Y3B1 194 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 SELENOKQ9Y6D0 94 aa11.01□□□□□ -0.65
SDC1-204ENST00000429035 TRAV1-2A0A0B4J238 106 aa11□□□□□ -0.65
SDC1-204ENST00000429035 ERICH4A6NGS2 130 aa11□□□□□ -0.65
SDC1-204ENST00000429035 HMX3A6NHT5 357 aa11□□□□□ -0.65
SDC1-204ENST00000429035 AIREO43918 545 aa11□□□□□ -0.65
SDC1-204ENST00000429035 BRI3O95415 125 aa11□□□□□ -0.65
SDC1-204ENST00000429035 IGHV3-23P01764 117 aa11□□□□□ -0.65
SDC1-204ENST00000429035 EDN2P20800 178 aa11□□□□□ -0.65
SDC1-204ENST00000429035 C15orf32Q32M92 178 aa11□□□□□ -0.65
SDC1-204ENST00000429035 C19orf35Q6ZS72 473 aa11□□□□□ -0.65
SDC1-204ENST00000429035 VKORC1L1Q8N0U8 176 aa11□□□□□ -0.65
SDC1-204ENST00000429035 OR2K2Q8NGT1 345 aa11□□□□□ -0.65
SDC1-204ENST00000429035 NUDCD2Q8WVJ2 157 aa11□□□□□ -0.65
SDC1-204ENST00000429035 TCTEX1D2Q8WW35 142 aa11□□□□□ -0.65
SDC1-204ENST00000429035 FYTTD1Q96QD9 318 aaKnown RBP11□□□□□ -0.65
SDC1-204ENST00000429035 SIGLEC8Q9NYZ4 499 aa11□□□□□ -0.65
SDC1-204ENST00000429035 BLOC1S6Q9UL45 172 aa11□□□□□ -0.65
SDC1-204ENST00000429035 HLA-AP01891 365 aaKnown RBP10.99□□□□□ -0.65
SDC1-204ENST00000429035 CD7P09564 240 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 DTYMKP23919 212 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 IZUMO2Q6UXV1 221 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 SLC25A42Q86VD7 318 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 DEFB125Q8N687 156 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 CENPOQ9BU64 300 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 VCX3BQ9H321 246 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 SRD5A3Q9H8P0 318 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 NDUFB11Q9NX14 153 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 SPATA2Q9UM82 520 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 RBMX2Q9Y388 322 aaKnown RBP10.99□□□□□ -0.65
SDC1-204ENST00000429035 S4R3C0 116 aa10.99□□□□□ -0.65
SDC1-204ENST00000429035 CSMD3Q7Z407 3707 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.98□□□□□ -0.65
SDC1-204ENST00000429035 TMEM235A6NFC5 223 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 JTBO76095 146 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 RPL27AP46776 148 aaKnown RBP10.98□□□□□ -0.65
SDC1-204ENST00000429035 GNG2P59768 71 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 RPL30P62888 115 aaKnown RBP10.98□□□□□ -0.65
SDC1-204ENST00000429035 ARL6IP1Q15041 203 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 CDNFQ49AH0 187 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 SSX9Q7RTT3 188 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 NECAP1Q8NC96 275 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 OR4S2Q8NH73 311 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 CACNG8Q8WXS5 425 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 TAS2R8Q9NYW2 309 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 FBXL7Q9UJT9 491 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 OR2W1Q9Y3N9 320 aa10.98□□□□□ -0.65
SDC1-204ENST00000429035 TRBV9A0A0B4J1U6 114 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 IGKV1D-13A0A0B4J2D9 117 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 TRDV1A0A1B0GX56 115 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 C2orf70A6NJV1 201 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 KBTBD11O94819 623 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 IGKV1-13P0DP09 117 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 Q6ZS49 121 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 NR2C2APQ86WQ0 139 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 TTC9CQ8N5M4 171 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 KCTD12Q96CX2 325 aaKnown RBP10.97□□□□□ -0.65
SDC1-204ENST00000429035 WDR89Q96FK6 387 aaPredicted RBP10.97□□□□□ -0.65
SDC1-204ENST00000429035 OR51E2Q9H255 320 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 HIPK2Q9H2X6 1198 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 ZNF257Q9Y2Q1 563 aa10.97□□□□□ -0.65
SDC1-204ENST00000429035 OR11H12B2RN74 326 aa10.96□□□□□ -0.65
SDC1-204ENST00000429035 TEX22C9J3V5 150 aa10.96□□□□□ -0.65
SDC1-204ENST00000429035 TNFSF12O43508 249 aa10.96□□□□□ -0.65
SDC1-204ENST00000429035 GGCTO75223 188 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms