RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 AQP3Q92482 292 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 MIEN1Q9BRT3 115 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TPPP3Q9BW30 176 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TXNIPQ9H3M7 391 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 FKBP11Q9NYL4 201 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A37Q9NYZ2 338 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 J3QT63 122 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GOSR2O14653 212 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 EDF1O60869 148 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SPDEFO95238 335 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TAS2R19P59542 299 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GNG2P59768 71 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GK2Q14410 553 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 NDUFAF6Q330K2 333 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM78Q5T7P6 136 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM222AQ5U5X8 452 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM90A2PQ658T7 463 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GCSAMQ8N6F7 178 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TPRX1Q8N7U7 411 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OR5D18Q8NGL1 313 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SPACA5Q96QH8 159 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 WNT5BQ9H1J7 359 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CYB5R1Q9UHQ9 305 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OAZ3Q9UMX2 235 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 YTHDF2Q9Y5A9 579 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PRRC2CQ9Y520 2896 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 FRYQ5TBA9 3013 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-21A0A0B4J1V1 117 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM272A0A1B0GTI8 110 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 MMP7P09237 267 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CTRLP40313 264 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CLDN12P56749 244 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GSCP56915 257 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 MTPNP58546 118 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CDC42P60953 191 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL30P62888 115 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF117Q03924 483 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 MRPL2Q5T653 305 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TPTE2P1Q5T6R2 138 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 DDI2Q5TDH0 399 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM131AQ6UXB0 335 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 LDLRAD3Q86YD5 345 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GVQW1Q8N7I0 195 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RAB3CQ96E17 227 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF285Q96NJ3 590 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A21Q9BQT8 299 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OR2H1Q9GZK4 316 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 EVA1AQ9H8M9 152 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 UQCC1Q9NVA1 299 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 IDI2-AS1Q9NZ38 188 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 NDUFAF4Q9P032 175 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TP73-AS1Q9UF72 201 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TP53TG1Q9Y2A0 90 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 MYRFQ9Y2G1 1151 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CHD5Q8TDI0 1954 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 IGLV3-10A0A075B6K4 115 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PGRMC1O00264 195 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RAB29O14966 203 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 HPRP00739 348 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GYPBP06028 91 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SULT1A3P0DMM9 295 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SULT1A4P0DMN0 295 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 GZMBP10144 247 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 NAT1P18440 290 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 MAS1LP35410 378 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PSMB10P40306 273 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PGFP49763 221 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 NCS1P62166 190 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PAX5Q02548 391 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 KIAA1644Q3SXP7 199 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 C8orf82Q6P1X6 216 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ACOT7LQ6ZUV0 252 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF502Q8TBZ5 544 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TAMM41Q96BW9 452 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 STACQ99469 402 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OVOL2Q9BRP0 275 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RHPN1-AS1Q9BWJ2 59 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RHOJQ9H4E5 214 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF446Q9NWS9 450 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 C21orf62Q9NYP8 219 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RNF11Q9Y3C5 154 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SCN2AQ99250 2005 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 KIF13BQ9NQT8 1826 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TRAV26-1A0A087WT03 109 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 F5H0A9 414 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 AURKAO14965 403 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 CIDEAO60543 219 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHA2P01877 340 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 SMCO1Q147U7 214 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PSG5Q15238 335 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PSG3Q16557 428 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM74A4Q5TZK3 123 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF691Q5VV52 312 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM244Q5VVB8 128 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 B3GLCTQ6Y288 498 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 H2BFWTQ7Z2G1 175 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ADCK1Q86TW2 530 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM75Q8N9X5 138 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OR5D14Q8NGL3 314 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 OR10Z1Q8NGY1 313 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms