RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 LYRM4Q9HD34 91 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 IGLL1P15814 213 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 VAX1Q5SQQ9 334 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FAM162BQ5T6X4 162 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 C1orf43Q9BWL3 253 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM30AQ9NV96 361 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TRBV5-4A0A0C4DH59 114 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 H0YGG7 62 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 HES3Q5TGS1 186 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 MMD2Q8IY49 270 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CEACAM4O75871 244 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RPL8P62917 257 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 MORN2Q502X0 79 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 ARHGEF39Q8N4T4 335 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM242Q9NWH2 141 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RARRES3Q9UL19 164 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 BRCA1P38398 1863 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 DOCK3Q8IZD9 2030 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 AMY1AP04745 511 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RTL8BQ17RB0 113 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 DEFB126Q9BYW3 111 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 R4GN57 208 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMED7-TICAM2A0A0A6YYA0 188 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 IGLV3-27P01718 113 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 OR13C6PQ8NH95 151 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PLPP1O14494 284 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FUT7Q11130 342 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SRSF6Q13247 344 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PRSS3P2Q8NHM4 247 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM230Q96A57 120 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CYSLTR1Q9Y271 337 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM265A0A087WTH1 108 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS5A0A0G2JLQ3 304 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 A0A0G2JNG1 304 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS3K7RE56 304 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS5Q14953 304 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PTH2Q96A98 100 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FOXA3P55318 350 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RAB1CQ92928 201 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 GPR75O95800 540 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 HLA-DRB1P01911 266 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SLC35E2P0CK97 266 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 NPPBP16860 134 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 IGLV3-25P01717 112 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FBXL14Q8N1E6 418 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SBF1O95248 1867 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FAM69BQ5VUD6 431 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SIGLEC12Q96PQ1 595 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 ERG28Q9UKR5 140 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 GPR132Q9UNW8 380 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 F2RL2O00254 374 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PLA2G5P39877 138 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RPL34P49207 117 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 KCNS1Q96KK3 526 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 BEX4Q9NWD9 120 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FAM166AQ6J272 317 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM136Q6ZRR5 245 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 AMELYQ99218 206 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 LTBP4Q8N2S1 1624 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 MDC1Q14676 2089 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 LOC101059948A0A1B0GTJ6 334 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 J3QRE1 110 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CD1AP06126 327 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PRDX1Q06830 199 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 GGTLC2Q14390 218 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TIMM23BQ5SRD1 257 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF324BQ6AW86 544 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PIGLQ9Y2B2 252 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SYNGR1O43759 233 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 NDFIP1Q9BT67 221 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 KLF16Q9BXK1 252 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PRSS1P07477 247 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CELA3BP08861 270 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 IFITM1P13164 125 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 GUSBP1Q15486 140 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 DEFB132Q7Z7B7 95 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 LRRC75AQ8NAA5 344 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 OR1L1Q8NH94 360 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PDFQ9HBH1 243 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 NHP2Q9NX24 153 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 LINC01553A4QN01 128 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 C3orf80F5H4A9 247 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 H3BMH7 237 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CST5P28325 142 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RPL27P61353 136 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 TRAV1-1A0A0B4J248 108 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 EML2O95834 649 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PVRP15151 417 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 AMTNQ6UX39 209 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 PRELID3AQ96N28 172 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FBLN5Q9UBX5 448 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 CACNG5Q9UF02 275 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 MCTS1Q9ULC4 181 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 FZR1Q9UM11 496 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 RPL32P62910 135 aaKnown RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 ARG2P78540 354 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 WDR5BQ86VZ2 330 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 NEU4Q8WWR8 484 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 APOBEC3DQ96AK3 386 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SCRT1Q9BWW7 348 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms