RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF729A6NN14 1252 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-204ENST00000423058 HTN3P15516 51 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 PLP1P60201 277 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM177Q53S58 311 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 PGLYRP4Q96LB8 373 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TRAV39A0A0B4J263 110 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 PCOLCEQ15113 449 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF385CQ66K41 422 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM216AQ8WUB2 273 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 EP300Q09472 2414 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-204ENST00000423058 DYSFO75923 2080 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 COL6A6A6NMZ7 2263 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 LTBP4Q8N2S1 1624 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TRBV9A0A0B4J1U6 114 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 ODAMA1E959 279 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A10PA6NDY2 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A18PA6NE21 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A16PA6NEW6 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A20PA6NIJ5 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A8PA6NJQ4 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A7PA6NKC0 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A22PA8MWA6 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A12PA8MX19 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A5PA8MXJ8 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A23PA8MXZ1 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 IL4P05112 153 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A15PP0C7V4 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A13PP0C7W8 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A14PP0C7W9 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A24PP0C7X0 464 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 SSTR5P35346 364 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF721Q8TF20 911 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 RNF133Q8WVZ7 376 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 AICDAQ9GZX7 198 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 RCC2Q9P258 522 aaKnown RBP5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TNFSF18Q9UNG2 199 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 DOCK4Q8N1I0 1966 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 FAM90A26D6RGX4 464 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 SEC11BP0C7V7 166 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 HOXB3P14651 431 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PKIAP61925 76 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MBNL2Q5VZF2 373 aaKnown RBP5.91□□□□□ -1.46
SCN1A-204ENST00000423058 HAPLN4Q86UW8 402 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PKIBQ9C010 78 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 OR51M1Q9H341 326 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF385DQ9H6B1 395 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 SEMA5BQ9P283 1151 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PILRBQ9UKJ0 227 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 COL18A1P39060 1754 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PATE3B3GLJ2 98 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MGAMO43451 1857 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PSCAO43653 123 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 IGKV3-20P01619 116 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 DSCR9P59020 149 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MYEOVQ96EZ4 313 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 IGHV3-72A0A0B4J1Y9 119 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 OR2H2O95918 312 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 CYB5R3P00387 301 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-204ENST00000423058 NGFRP08138 427 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 SMIM18P0DKX4 95 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 ARL6IP6Q8N6S5 226 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 TUBD1Q9UJT1 453 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 SDK2Q58EX2 2172 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 A0A1W2PPE3 182 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 A1L4Q6 167 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 LEPROTL1O95214 131 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 FOLR2P14207 255 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF880Q6PDB4 577 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 OR4D5Q8NGN0 318 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 OR5AC2Q9NZP5 309 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 TCRBV4S1A1TA0A5B7 111 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PLAUP00749 431 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MEF2CQ06413 473 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-204ENST00000423058 C9orf40Q8IXQ3 194 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MARVELD1Q9BSK0 173 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 PRSS22Q9GZN4 317 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MRPS18BQ9Y676 258 aaKnown RBP5.91□□□□□ -1.46
SCN1A-204ENST00000423058 WDR81Q562E7 1941 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 NKX2-8O15522 239 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 AWAT1Q58HT5 328 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 TIMM23BQ5SRD1 257 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM42Q69YG0 159 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 MARVELD3Q96A59 401 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 JPT1Q9UK76 154 aa5.91□□□□□ -1.46
SCN1A-204ENST00000423058 LDLRAD2Q5SZI1 272 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 HOGA1Q86XE5 327 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 OR8D4Q8NGM9 314 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 SLC25A28Q96A46 364 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 RPRMQ9NS64 109 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 PTPRDP23468 1912 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 TRAV8-7A0A075B6U6 113 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 H3BQ15 152 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 IL6RP08887 468 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-204ENST00000423058 UCP3P55916 312 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 VN1R4Q7Z5H5 301 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 ZIC4Q8N9L1 334 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 GP6Q9HCN6 339 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 AKIP1Q9NQ31 210 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 CACNA1BQ00975 2339 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 MED19A0JLT2 244 aaPredicted RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms