RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ZNF506Q5JVG8 444 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 PRAMEF5Q5TYX0 476 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF439Q8NDP4 499 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 PSMG3-AS1Q96PY0 264 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 OR4C12Q96R67 309 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 CCL13Q99616 98 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 SMCO4Q9NRQ5 59 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 COQ3Q9NZJ6 369 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 PROP1O75360 226 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 IFNA1P01562 189 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 GYPAP02724 150 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 MRPS11P82912 194 aaKnown RBP11.19□□□□□ -0.62
LIMS1-205ENST00000410093 HOXA4Q00056 320 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-205ENST00000410093 LTC4SQ16873 150 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 C4orf17Q53FE4 359 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 LRRC10Q5BKY1 277 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 CT45A1Q5HYN5 189 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SLC25A48Q6ZT89 311 aaKnown RBP11.19□□□□□ -0.62
LIMS1-205ENST00000410093 HAPLN4Q86UW8 402 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 CT45A3Q8NHU0 189 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SFT2D1Q8WV19 159 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 P2RX4Q99571 388 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SLC25A10Q9UBX3 287 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-205ENST00000410093 PMS2P5A8MQ11 134 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SHISA9B4DS77 424 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 H7C2Y5 167 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 TMPRSS2O15393 492 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 NDUFB3O43676 98 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 IFNA17P01571 189 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 ATF4P18848 351 aaPredicted RBP11.19□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF134P52741 427 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 RAB11AP62491 216 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 CCL8P80075 99 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 RUNX1Q01196 453 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 ARL16Q0P5N6 197 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 RTL8BQ17RB0 113 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SOHLH1Q5JUK2 328 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 HEPN1Q6WQI6 88 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF709Q8N972 641 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 DYNLRB1Q9NP97 96 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 KCNIP2Q9NS61 270 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 TMEM106BQ9NUM4 274 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 FKBP11Q9NYL4 201 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 SH3BGRL2Q9UJC5 107 aa11.19□□□□□ -0.62
LIMS1-205ENST00000410093 HCFC1P51610 2035 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 A1L4Q6 167 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 FAM74A7A6NL05 159 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 C9JQL5 133 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 ARG1P05089 322 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 FAM74A3Q4VXF1 159 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 RBMS3Q6XE24 437 aaKnown RBP11.18□□□□□ -0.62
LIMS1-205ENST00000410093 DEFB108BQ8NET1 73 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 CLDND2Q8NHS1 167 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 RPRMQ9NS64 109 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 FOXA2Q9Y261 457 aaPredicted RBP11.18□□□□□ -0.62
LIMS1-205ENST00000410093 PLCE1Q9P212 2302 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 SETXQ7Z333 2677 aaKnown RBP11.18□□□□□ -0.62
LIMS1-205ENST00000410093 FLNCQ14315 2725 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 HECTD1Q9ULT8 2610 aa11.18□□□□□ -0.62
LIMS1-205ENST00000410093 SAA2-SAA4A0A096LPE2 208 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 FNDC10F2Z333 226 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 TNFRSF13BO14836 293 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 GPR37O15354 613 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 SAA2P0DJI9 122 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 NDUFB7P17568 137 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 MDKP21741 143 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 NPBWR1P48145 328 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 RPL31P62899 125 aaKnown RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 RELBQ01201 579 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 FAM201AQ5SY85 155 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 OR8G2PQ6IF36 304 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 FAM53AQ6NSI3 398 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 ADAM5Q6NVV9 412 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 LINC00311Q8N616 119 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 FAM216BQ8N7L0 139 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 C15orf54Q8N8G6 183 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF596Q8TC21 504 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 PLPPR2Q96GM1 343 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF714Q96N38 554 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 TMEM140Q9NV12 185 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 CISD1Q9NZ45 108 aaKnown RBP11.17□□□□□ -0.62
LIMS1-205ENST00000410093 PRNDQ9UKY0 176 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF257Q9Y2Q1 563 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 LRRK2Q5S007 2527 aa11.17□□□□□ -0.62
LIMS1-205ENST00000410093 TRBV23-1A0A0A0MS06 115 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 UBE2L5PA0A1B0GUS4 154 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 C15orf61A6NNL5 157 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 E7EQL1 145 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 OR9G9P0C7N8 305 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 OR2B8PP59922 312 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 DLK1P80370 383 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 FLI1Q01543 452 aaPredicted RBP11.16□□□□□ -0.62
LIMS1-205ENST00000410093 RPL39P5Q59GN2 51 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 ZNF787Q6DD87 383 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 TCF23Q7RTU1 214 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 LYG1Q8N1E2 194 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 RSG1Q9BU20 258 aa11.16□□□□□ -0.62
LIMS1-205ENST00000410093 QTRT1Q9BXR0 403 aaKnown RBP11.16□□□□□ -0.62
LIMS1-205ENST00000410093 CTXND1A0A1B0GTU2 59 aa11.15□□□□□ -0.62
LIMS1-205ENST00000410093 NFYBP25208 207 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms