RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 FAM90A9PA6NNJ1 464 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 MGST3O14880 152 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 TGOLN2O43493 480 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 BSXQ3C1V8 233 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 HIST3H2BBQ8N257 126 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 ZNRF1Q8ND25 227 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 MBD3L2Q8NHZ7 208 aaPredicted RBP13.16□□□□□ -0.3
HOXD3-202ENST00000410016 PARD6AQ9NPB6 346 aa13.16□□□□□ -0.3
HOXD3-202ENST00000410016 OTOGLQ3ZCN5 2332 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 F2RL2O00254 374 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 CD1BP29016 333 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 C1orf229Q6ZS94 237 aaPredicted RBP13.15□□□□□ -0.3
HOXD3-202ENST00000410016 OR4F5Q8NH21 305 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 OR4F4Q96R69 305 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 CADP27708 2225 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 IGHV3OR15-7A0A075B7D8 119 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 PAGE4O60829 102 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 CEACAM4O75871 244 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 LHBP01229 141 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 IGHV3-13P01766 116 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 DEFB109BQ30KR1 87 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 PDLIM3Q53GG5 364 aaPredicted RBP13.15□□□□□ -0.3
HOXD3-202ENST00000410016 RPL39P5Q59GN2 51 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 UTF1Q5T230 341 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 C16orf82Q7Z2V1 217 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 VKORC1L1Q8N0U8 176 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 OR51G1Q8NGK1 321 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 FAM216AQ8WUB2 273 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 GPR61Q9BZJ8 451 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 IFI27L2Q9H2X8 130 aa13.15□□□□□ -0.3
HOXD3-202ENST00000410016 DMXL1Q9Y485 3027 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 C17orf112F2Z3M2 114 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 PPP1R2P9O14990 202 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 RBFOX2O43251 390 aaKnown RBP eCLIP13.14□□□□□ -0.31
HOXD3-202ENST00000410016 CGB3P0DN86 165 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 CGB7P0DN87 165 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 NPPCP23582 126 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 SPCS3P61009 180 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 NKX6-1P78426 367 aaPredicted RBP13.14□□□□□ -0.31
HOXD3-202ENST00000410016 GCSAMLQ5JQS6 135 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 SSX9Q7RTT3 188 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 MEGF10Q96KG7 1140 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 OR2V2Q96R30 315 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 SVILO95425 2214 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 M0R1X1 148 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 IGHV3-7P01780 117 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 S100A2P29034 98 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 VDAC2P45880 294 aaPredicted RBP13.14□□□□□ -0.31
HOXD3-202ENST00000410016 C4orf17Q53FE4 359 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 ZNF474Q6S9Z5 364 aaPredicted RBP13.14□□□□□ -0.31
HOXD3-202ENST00000410016 OR52E5Q8NH55 327 aa13.14□□□□□ -0.31
HOXD3-202ENST00000410016 ELOA3CA0A087WX78 387 aaPredicted RBP13.13□□□□□ -0.31
HOXD3-202ENST00000410016 TRAV3A0A0B4J244 114 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 PRSS46E5RG02 174 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 RRHO14718 337 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 LY86O95711 162 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 CDC34P49427 236 aaPredicted RBP13.13□□□□□ -0.31
HOXD3-202ENST00000410016 ZNF83P51522 516 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 RELBQ01201 579 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 TMEM249Q2WGJ8 235 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 ACOT6Q3I5F7 207 aaPredicted RBP13.13□□□□□ -0.31
HOXD3-202ENST00000410016 OR10A7Q8NGE5 316 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 PPP1R35Q8TAP8 253 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 DDB2Q92466 427 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 TTC28Q96AY4 2481 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 TMPRSS3P57727 454 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 PRAMEF5Q5TYX0 476 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 CDPF1Q6NVV7 123 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 MOGAT3Q86VF5 341 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 OR10D4PQ8NGN7 298 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 TMEM170AQ8WVE7 144 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 SRD5A3Q9H8P0 318 aa13.13□□□□□ -0.31
HOXD3-202ENST00000410016 SLC31A2O15432 143 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 GFRA3O60609 400 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 RTP5Q14D33 572 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 TIMM23BQ5SRD1 257 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 TREML4Q6UXN2 200 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 OR4X1Q8NH49 305 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 OR4A16Q8NH70 328 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 RAB1CQ92928 201 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 S100PBPQ96BU1 408 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 NEIL1Q96FI4 390 aaPredicted RBP13.12□□□□□ -0.31
HOXD3-202ENST00000410016 FAM234AQ9H0X4 552 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 TRAV38-1A0A0B4J264 116 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 SMCO3A2RU48 225 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 IFNA10P01566 189 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 GLRXP35754 106 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 C17orf58Q2M2W7 97 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 PDZD11Q5EBL8 140 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 ALKBH2Q6NS38 261 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 TMEM68Q96MH6 324 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 GAB2Q9UQC2 676 aa13.12□□□□□ -0.31
HOXD3-202ENST00000410016 C11orf94C9JXX5 98 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 EDDM3BP56851 147 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 RPRMLQ8N4K4 120 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 NECAP1Q8NC96 275 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 S1PR3Q99500 378 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 CALYQ9NYX4 217 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 DMRT1Q9Y5R6 373 aa13.11□□□□□ -0.31
HOXD3-202ENST00000410016 HCFC1P51610 2035 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms