RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 DPF1Q92782 380 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 RSRP1Q9BUV0 290 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 MRPL20Q9BYC9 149 aaKnown RBP7.58□□□□□ -1.2
LIG4-202ENST00000405925 RBKSQ9H477 322 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 DCAF16Q9NXF7 216 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 A0A0B4J293 547 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 ZNF320A2RRD8 509 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 HOXA4Q00056 320 aaPredicted RBP7.58□□□□□ -1.2
LIG4-202ENST00000405925 TNFRSF9Q07011 255 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 IL22RA2Q969J5 263 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 PITPNC1Q9UKF7 332 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 ZNF785A8K8V0 405 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 DEDDO75618 318 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 COL8A2P25067 703 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 FGF8P55075 233 aaPredicted RBP7.58□□□□□ -1.2
LIG4-202ENST00000405925 RHOBP62745 196 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 HTD2P86397 168 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 MORN2Q502X0 79 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 PCSK4Q6UW60 755 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 SEM1Q6ZVN7 128 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 MALSU1Q96EH3 234 aa7.58□□□□□ -1.2
LIG4-202ENST00000405925 IGKV1D-17A0A075B6S4 117 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 NAPSAO96009 420 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 ZNF735P0CB33 412 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 CXCL2P19875 107 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 ATP6V0CP27449 155 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 B2MP61769 119 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 HMGN3Q15651 99 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 CLLU1Q5K131 121 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 FAM78BQ5VT40 261 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 PHYHIPLQ96FC7 376 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 SMIM7Q9BQ49 75 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 FBXL15Q9H469 300 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 HIF1ANQ9NWT6 349 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 KPTNQ9Y664 436 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 AUP1Q9Y679 476 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 YLPM1P49750 1951 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 FASNP49327 2511 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 YPEL1O60688 119 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 REG1AP05451 166 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TAGLN2P37802 199 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 SSTP61278 116 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 C2orf68Q2NKX9 166 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 OR11H4Q8NGC9 324 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 OR1B1Q8NGR6 318 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 LSM10Q969L4 123 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 YPEL2Q96QA6 119 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TPPP3Q9BW30 176 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TMEM133Q9H2Q1 129 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TIMM9Q9Y5J7 89 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 SAA2-SAA4A0A096LPE2 208 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 MPTX1A8MV57 137 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 CGAP01215 116 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 SAA2P0DJI9 122 aaPredicted RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 PF4V1P10720 104 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 ZNF273Q14593 569 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TIGITQ495A1 244 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 WDR25Q64LD2 544 aaPredicted RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 UNQ5815/PRO19632Q6UWF5 114 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 QTRT1Q9BXR0 403 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 PATZ1Q9HBE1 687 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 LRP4O75096 1905 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 HLA-GP17693 338 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 NAT1P18440 290 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 PPOXP50336 477 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 FLI1Q01543 452 aaPredicted RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 GUK1Q16774 197 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 Q6P435 159 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 TEPPQ6URK8 271 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 OR2T10Q8NGZ9 312 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 COQ2Q96H96 371 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 RPUSD1Q9UJJ7 312 aaKnown RBP7.57□□□□□ -1.2
LIG4-202ENST00000405925 WSB1Q9Y6I7 421 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 URGCP-MRPS24S4R325 110 aa7.57□□□□□ -1.2
LIG4-202ENST00000405925 EML6Q6ZMW3 1958 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 MED12LQ86YW9 2145 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 IGHV3-48P01763 117 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 CT45A10P0DMU9 189 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 CD24P25063 80 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 CD1BP29016 333 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 RND3P61587 244 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 SCGB2A2Q13296 93 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 SP5Q6BEB4 398 aaPredicted RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 DNM1P46Q6ZS02 220 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 SLC45A2Q9UMX9 530 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 FAM90A26D6RGX4 464 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 IGKV1D-33P01593 117 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 IGKV1-33P01594 117 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 MT-ND4LP03901 98 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 RAB5BP61020 215 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 ZNF345Q14585 488 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 WDR86Q86TI4 376 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 ZNF525Q8N782 197 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 C15orf54Q8N8G6 183 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 OSR1Q8TAX0 266 aaPredicted RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 BLNKQ8WV28 456 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 C1orf147Q96MC9 270 aaPredicted RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 GINS3Q9BRX5 216 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 BPESC1Q9GZL8 116 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms