RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FOXJ2Q9P0K8 574 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 PAM16Q9Y3D7 125 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 MLNRO43193 412 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 SERPINA7P05543 415 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 PPP1CBP62140 327 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 MARCH11A6NNE9 402 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 NPIPB11E5RHQ5 1161 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 RAC2P15153 192 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 TOMM20LQ6UXN7 152 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 GP6Q9HCN6 339 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 NAGKQ9UJ70 344 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 TET2Q6N021 2002 aaPredicted RBP17.47■□□□□ 0.39
CTCF-202ENST00000401394 MGAQ8IWI9 3026 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 SH2D1BO14796 132 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 CISD2Q8N5K1 135 aaKnown RBP17.47■□□□□ 0.39
CTCF-202ENST00000401394 Q8TCH9 128 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 ANAPC16Q96DE5 110 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 RTL8AQ9BWD3 113 aa17.47■□□□□ 0.39
CTCF-202ENST00000401394 PKIBQ9C010 78 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 YTHDF2Q9Y5A9 579 aaKnown RBP17.46■□□□□ 0.39
CTCF-202ENST00000401394 PXMP4Q9Y6I8 212 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 TNRC6BQ9UPQ9 1833 aaKnown RBP17.46■□□□□ 0.39
CTCF-202ENST00000401394 FCGR3BO75015 233 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 COX5BP10606 129 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 IQCJQ1A5X6 159 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 RNFT1Q5M7Z0 435 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 DCAF12Q5T6F0 453 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 FAM103A1Q9BTL3 118 aaKnown RBP17.46■□□□□ 0.39
CTCF-202ENST00000401394 ELOVL5Q9NYP7 299 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 TIMM9Q9Y5J7 89 aa17.46■□□□□ 0.39
CTCF-202ENST00000401394 CD1BP29016 333 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 KIAA1644Q3SXP7 199 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 RPL39P5Q59GN2 51 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 DBX2Q6ZNG2 339 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 LINC00596Q86U02 117 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 SFRP2Q96HF1 295 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 FAM173AQ9BQD7 235 aa17.46■□□□□ 0.38
CTCF-202ENST00000401394 SEPSECSQ9HD40 501 aaKnown RBP17.46■□□□□ 0.38
CTCF-202ENST00000401394 A0A1W2PNU3 283 aaPredicted RBP17.45■□□□□ 0.38
CTCF-202ENST00000401394 A0A1W2PPV4 95 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 K7EN84 100 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 SMPD2O60906 423 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 RAB4BP61018 213 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 EIF4EBP1Q13541 118 aaPredicted RBP17.45■□□□□ 0.38
CTCF-202ENST00000401394 NRN1LQ496H8 165 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 ABHD17BQ5VST6 288 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 TMEM144Q7Z5S9 345 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 KCNIP1Q9NZI2 227 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 WIPI2Q9Y4P8 454 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 ADGRG4Q8IZF6 3080 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 AHRRA9YTQ3 701 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 TFPI2P48307 235 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 FOXF2Q12947 444 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 MSMO1Q15800 293 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 ACSF3Q4G176 576 aaPredicted RBP17.45■□□□□ 0.38
CTCF-202ENST00000401394 C6orf15Q6UXA7 325 aaPredicted RBP17.45■□□□□ 0.38
CTCF-202ENST00000401394 MS4A5Q9H3V2 200 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 HEATR1Q9H583 2144 aaKnown RBP17.45■□□□□ 0.38
CTCF-202ENST00000401394 ZDHHC11Q9H8X9 412 aa17.45■□□□□ 0.38
CTCF-202ENST00000401394 IRF2P14316 349 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 ACOT6Q3I5F7 207 aaPredicted RBP17.44■□□□□ 0.38
CTCF-202ENST00000401394 KCNIP4Q6PIL6 250 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 C1orf229Q6ZS94 237 aaPredicted RBP17.44■□□□□ 0.38
CTCF-202ENST00000401394 BCL2L2Q92843 193 aaPredicted RBP17.44■□□□□ 0.38
CTCF-202ENST00000401394 SERF1AO75920 110 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 NPSP0C0P6 89 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 ERVFC1-1P60608 527 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 VN1R17PQ8TDU5 208 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 KALRNO60229 2985 aa17.44■□□□□ 0.38
CTCF-202ENST00000401394 ACTL6BO94805 426 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 HPRT1P00492 218 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 SRP14P37108 136 aaKnown RBP17.43■□□□□ 0.38
CTCF-202ENST00000401394 ZNF146Q15072 292 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 C11orf53Q8IXP5 236 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 BEND2Q8NDZ0 799 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 TYMSP04818 313 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 FABP6P51161 128 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 TDGF1P3P51864 188 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 SSPNQ14714 243 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 KRTCAP3Q53RY4 240 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 MOB3BQ86TA1 216 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 NINJ1Q92982 152 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 MGST2Q99735 147 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 PARD6GQ9BYG4 376 aaPredicted RBP17.43■□□□□ 0.38
CTCF-202ENST00000401394 F6UZH7 168 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 IGHEP01854 428 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 CYC1P08574 325 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 TIMP3P35625 211 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 SOX8P57073 446 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 TREML4Q6UXN2 200 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 C1orf159Q96HA4 380 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 HSPB9Q9BQS6 159 aa17.43■□□□□ 0.38
CTCF-202ENST00000401394 R3HDM4Q96D70 268 aa17.42■□□□□ 0.38
CTCF-202ENST00000401394 FAM90A26D6RGX4 464 aa17.42■□□□□ 0.38
CTCF-202ENST00000401394 ARG2P78540 354 aa17.42■□□□□ 0.38
CTCF-202ENST00000401394 CMTM2Q8TAZ6 248 aa17.42■□□□□ 0.38
CTCF-202ENST00000401394 TMEM30CPA0ZSE6 113 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 IER3P46695 156 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 TCL1AP56279 114 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 ZNF766Q5HY98 468 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms