RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MIC13Q5XKP0 118 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 TMEM14EPQ6UXP3 125 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 H2BFWTQ7Z2G1 175 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 VKORC1L1Q8N0U8 176 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 OR8I2Q8N0Y5 310 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 STPG4Q8N801 248 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 ST6GALNAC3Q8NDV1 305 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 MRPS18CQ9Y3D5 142 aaKnown RBP8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 IGHV5-10-1A0A0J9YXX1 117 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 CDIPTO14735 213 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 NXPH2O95156 264 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 LCN2P80188 198 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 C3AR1Q16581 482 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 PDLIM3Q53GG5 364 aaPredicted RBP8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 MED12LQ86YW9 2145 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 APOBEC3DQ96AK3 386 aaPredicted RBP8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 NAT8BQ9UHF3 227 aa8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 DSPP15924 2871 aaKnown RBP8.28□□□□□ -1.08
PTCHD4-202ENST00000398738 IGLV3-19P01714 112 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 TYMSP04818 313 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 CCL4P13236 92 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 LTBRP36941 435 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 MAJINQ3KP22 176 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 SPATA45Q537H7 98 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 COL5A1-AS1Q5SY13 56 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 WDR74Q6RFH5 385 aaPredicted RBP8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 TUSC5Q8IXB3 177 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 STARD4Q96DR4 205 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 HINT2Q9BX68 163 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 C1QTNF5Q9BXJ0 243 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 HIPK2Q9H2X6 1198 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 ZNF703Q9H7S9 590 aaPredicted RBP8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 SERTAD4Q9NUC0 356 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 RNF24Q9Y225 148 aa8.27□□□□□ -1.08
PTCHD4-202ENST00000398738 C20orf202A1L168 122 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 GJE1A6NN92 205 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 OR2H2O95918 312 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 UMODP07911 640 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 RAC2P15153 192 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 LINC00310P59036 64 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 MRPL54Q6P161 138 aaKnown RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 CENPVQ7Z7K6 275 aaPredicted RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 RNASE8Q8TDE3 154 aaKnown RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 ZNF391Q9UJN7 358 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 LRRC30A6NM36 301 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 TOX3O15405 576 aaPredicted RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 CLDN14O95500 239 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 OR5G3P0C626 314 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 AESQ08117 197 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 RAB30Q15771 203 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 LCN12Q6JVE5 192 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 UNQ5815/PRO19632Q6UWF5 114 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 GGNQ86UU5 652 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 UHRF2Q96PU4 802 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 GCM1Q9NP62 436 aa8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 TBL2Q9Y4P3 447 aaKnown RBP8.27□□□□□ -1.09
PTCHD4-202ENST00000398738 LOC102724200A0A096LPH7 203 aaPredicted RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 LRP5LA4QPB2 252 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 VENTXO95231 258 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 HNRNPA3P51991 378 aaKnown RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 FAM214BQ7L5A3 538 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 MRGPRDQ8TDS7 321 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 LRFN3Q9BTN0 628 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 HEYLQ9NQ87 328 aaPredicted RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 C17orf112F2Z3M2 114 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 TIMP3P35625 211 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 GABRA2P47869 451 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 LHX2P50458 406 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 RPL31P62899 125 aaKnown RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 RNPS1Q15287 305 aaKnown RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 TRIM61Q5EBN2 209 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 DOLPP1Q86YN1 238 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 SLC35E1Q96K37 410 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 SF3B5Q9BWJ5 86 aaKnown RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 QTRT1Q9BXR0 403 aaKnown RBP8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 GNB4Q9HAV0 340 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 ZNF586Q9NXT0 402 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 ZFHX4Q86UP3 3567 aa8.26□□□□□ -1.09
PTCHD4-202ENST00000398738 RRHO14718 337 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 MLNRO43193 412 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 ZNF253O75346 499 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 IL6RP08887 468 aaPredicted RBP8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 CD1BP29016 333 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 S100A7P31151 101 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 GNG3P63215 75 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 PLP2Q04941 152 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 SPATA31B1PQ5VZV4 182 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 SPINK14Q6IE38 97 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 Q6ZS49 121 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 ZNF826PQ6ZT77 177 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 TMEM144Q7Z5S9 345 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 ABHD12Q8N2K0 398 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 PPP1R14DQ9NXH3 145 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 WIPI2Q9Y4P8 454 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 IGHV1-45A0A0A0MS14 117 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 FAM90A10PA6NDY2 464 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 FAM90A18PA6NE21 464 aa8.25□□□□□ -1.09
PTCHD4-202ENST00000398738 FAM90A16PA6NEW6 464 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms