RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TNFSF12O43508 249 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 SYNGR2O43760 224 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 NDUFB8O95169 186 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1-13P0DP09 117 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 COMPP49747 757 aaPredicted RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 RBM11P57052 281 aaKnown RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 TESK1Q15569 626 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 OR4B1Q8NGF8 309 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 NEIL1Q96FI4 390 aaPredicted RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 CIB3Q96Q77 187 aaPredicted RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 OR4C12Q96R67 309 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 GPHA2Q96T91 129 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 ZNF442Q9H7R0 627 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 SLC45A2Q9UMX9 530 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 CTXND1A0A1B0GTU2 59 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 NPIPA2E9PIF3 369 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 NPIPA3F8WFD2 350 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 SYNGR3O43761 229 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 PGLYRP1O75594 196 aaPredicted RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 CTXN2P0C2S0 81 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 F2RP25116 425 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 S100A7P31151 101 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 LINC00310P59036 64 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 UBE2V1Q13404 147 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 LINC01551Q86U37 167 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 RBM24Q9BX46 236 aaKnown RBP9.37□□□□□ -0.91
CUX1-204ENST00000393824 CCL28Q9NRJ3 127 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 ELOVL5Q9NYP7 299 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 PSENENQ9NZ42 101 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 GTF3C1Q12789 2109 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 MMP23AO75900 390 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 IGHG3P01860 377 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 WNT2P09544 360 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 ADMP35318 185 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 CTRLP40313 264 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 DAZAP2Q15038 168 aaPredicted RBP9.36□□□□□ -0.91
CUX1-204ENST00000393824 OR5AU1Q8NGC0 362 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 OR1F12Q8NHA8 337 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 VN1R17PQ8TDU5 208 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 ZNF837Q96EG3 531 aaPredicted RBP9.36□□□□□ -0.91
CUX1-204ENST00000393824 HSPB9Q9BQS6 159 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 ULBP2Q9BZM5 246 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 PCNX1Q96RV3 2341 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 TOMM40O96008 361 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 CDKN1AP38936 164 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 UCNP55089 124 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 MMDQ15546 238 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 PCSK4Q6UW60 755 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 Q6ZRM9 215 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 LHFPL4Q7Z7J7 247 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 LRP11Q86VZ4 500 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 STPG4Q8N801 248 aa9.36□□□□□ -0.91
CUX1-204ENST00000393824 LSM10Q969L4 123 aaKnown RBP9.36□□□□□ -0.91
CUX1-204ENST00000393824 SF3B5Q9BWJ5 86 aaKnown RBP9.36□□□□□ -0.91
CUX1-204ENST00000393824 ZGRF1Q86YA3 2104 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 LOC105371242A0A075B767 164 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 GJE1A6NN92 205 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 AQP7O14520 342 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 DNPH1O43598 174 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 NAPSAO96009 420 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 NPPCP23582 126 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 LY6DQ14210 128 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 MSMO1Q15800 293 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 RPRMLQ8N4K4 120 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 OR56B2PQ8NGI1 322 aa9.35□□□□□ -0.91
CUX1-204ENST00000393824 IGHV3-9P01782 118 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 SCTP09683 121 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 PDCD1Q15116 288 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 ACSM6Q6P461 480 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 MED12LQ86YW9 2145 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 SAXO1Q8IYX7 474 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 OR2D3Q8NGH3 330 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 SGMS2Q8NHU3 365 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 GATAD1Q8WUU5 269 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 RNF2Q99496 336 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 PRORYQ9H606 182 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 POLEQ07864 2286 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 KIR2DS1A0A191URI9 304 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 hCG_38984A0A1B0GV85 526 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 GRIFINA4D1Z8 144 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 SERF1AO75920 110 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 OR7C1O76099 320 aaPredicted RBP9.34□□□□□ -0.91
CUX1-204ENST00000393824 OR5G3P0C626 314 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 S100GP29377 79 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 KIR2DS4P43632 304 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 Q0VG73 95 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 KIR2DS1Q14954 304 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 TUSC5Q8IXB3 177 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 OR2AE1Q8NHA4 323 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 OR5P3Q8WZ94 311 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 SNRNP40Q96DI7 357 aaKnown RBP9.34□□□□□ -0.91
CUX1-204ENST00000393824 CHODLQ9H9P2 273 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 PATZ1Q9HBE1 687 aaKnown RBP9.34□□□□□ -0.91
CUX1-204ENST00000393824 UQCR10Q9UDW1 63 aa9.34□□□□□ -0.91
CUX1-204ENST00000393824 ZNF816-ZNF321PA0A0X1KG74 233 aa9.33□□□□□ -0.92
CUX1-204ENST00000393824 PAGE4O60829 102 aa9.33□□□□□ -0.92
CUX1-204ENST00000393824 KRASP01116 189 aa9.33□□□□□ -0.92
CUX1-204ENST00000393824 SERPINE2P07093 398 aa9.33□□□□□ -0.92
CUX1-204ENST00000393824 IAPPP10997 89 aa9.33□□□□□ -0.92
CUX1-204ENST00000393824 CRISP2P16562 243 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms