RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 NXPH3O95157 252 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 HSPB1P04792 205 aaKnown RBP10.29□□□□□ -0.76
CIITA-202ENST00000381835 RUNX1Q01196 453 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 SRSF7Q16629 238 aaKnown RBP eCLIP10.29□□□□□ -0.76
CIITA-202ENST00000381835 ZNF880Q6PDB4 577 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 Q6ZS49 121 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 IL1F10Q8WWZ1 152 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 YLPM1P49750 1951 aaKnown RBP10.28□□□□□ -0.76
CIITA-202ENST00000381835 CLEC18AA5D8T8 446 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 IFITM10A6NMD0 228 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 EPHA1P21709 976 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 COL8A1P27658 744 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 BPIFB3P59826 476 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 RPL23AP62750 156 aaKnown RBP10.28□□□□□ -0.76
CIITA-202ENST00000381835 HLA-DRB3P79483 266 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 PYY3Q5JQD4 70 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 ZNF506Q5JVG8 444 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 ZNF818PQ6ZRF7 136 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 MOB1BQ7L9L4 216 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 FGFRL1Q8N441 504 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 CLEC18CQ8NCF0 446 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 ABHD14BQ96IU4 210 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 GPHA2Q96T91 129 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 PFDN5Q99471 154 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 SIRT7Q9NRC8 400 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 MBNL3Q9NUK0 354 aaKnown RBP10.28□□□□□ -0.76
CIITA-202ENST00000381835 TGIF2-C20orf24A0A0A6YYL0 155 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 CXorf65A6NEN9 183 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 CYB5BO43169 146 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 ERVFRD-1P60508 538 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 BAXQ07812 192 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 HERPUD1Q15011 391 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 LYPD2Q6UXB3 125 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 CMTM1Q8IZ96 169 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 OR5D13Q8NGL4 314 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 SVIPQ8NHG7 77 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 MRGPRDQ8TDS7 321 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 RBMXL1Q96E39 390 aaKnown RBP10.28□□□□□ -0.76
CIITA-202ENST00000381835 DCTN5Q9BTE1 182 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 CELSR2Q9HCU4 2923 aa10.28□□□□□ -0.76
CIITA-202ENST00000381835 IGKV1-6A0A0C4DH72 117 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ZNF729A6NN14 1252 aaPredicted RBP10.27□□□□□ -0.77
CIITA-202ENST00000381835 CHST1O43916 411 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 TMEM50AO95807 157 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 HBE1P02100 147 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ID3Q02535 119 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ODF3L1Q8IXM7 274 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 OR13A1Q8NGR1 328 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 CLDND2Q8NHS1 167 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 KCNIP1Q9NZI2 227 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ODAMA1E959 279 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 MMP9P14780 707 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 NDUFB7P17568 137 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 VDAC1P21796 283 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 NMSQ5H8A3 153 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 C9orf152Q5JTZ5 239 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 SPNS3Q6ZMD2 512 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 SLC35E3Q7Z769 313 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ZNF383Q8NA42 475 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 TMEM68Q96MH6 324 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ATP5SQ99766 215 aa10.27□□□□□ -0.77
CIITA-202ENST00000381835 ASH1LQ9NR48 2969 aaKnown RBP10.26□□□□□ -0.77
CIITA-202ENST00000381835 DUXBA0A1W2PPF3 345 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 SEC14L6B5MCN3 397 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BKO60814 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BJP06899 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BOP23527 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BBP33778 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BDP58876 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BCP62807 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST2H2BEQ16778 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 KHDC3LQ587J8 217 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.26□□□□□ -0.77
CIITA-202ENST00000381835 SLC25A24Q6NUK1 477 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 DPPA3Q6W0C5 159 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BHQ93079 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 CCL19Q99731 98 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BNQ99877 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H2BMQ99879 126 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 FAM234AQ9H0X4 552 aa10.26□□□□□ -0.77
CIITA-202ENST00000381835 SLC25A10Q9UBX3 287 aaPredicted RBP10.26□□□□□ -0.77
CIITA-202ENST00000381835 C12orf77C9JDV5 145 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 TRGC2P03986 189 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 UCP1P25874 307 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 SSTR5P35346 364 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 TAS2R30P59541 319 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 PAX5Q02548 391 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 MALRD1Q5VYJ5 2156 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 OR10D4PQ8NGN7 298 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 OR1L1Q8NH94 360 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 OR10J5Q8NHC4 309 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 RFESDQ8TAC1 157 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 CCL28Q9NRJ3 127 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 CTSZQ9UBR2 303 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 CBY1Q9Y3M2 126 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 VPS13CQ709C8 3753 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 IGKV1D-13A0A0B4J2D9 117 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 OVOL3O00110 214 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 TNFRSF13BO14836 293 aaPredicted RBP10.25□□□□□ -0.77
CIITA-202ENST00000381835 TNFSF12O43508 249 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms