RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 OR5R1Q8NH85 324 aa13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 MISP3Q96FF7 219 aa13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 KCNIP1Q9NZI2 227 aa13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 AKAP13Q12802 2813 aa13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 NBASA2RRP1 2371 aa13.55□□□□□ -0.24
NKX3-1-201ENST00000380871 RNF212BA8MTL3 300 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 C11orf94C9JXX5 98 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 PMS2P11Q13670 270 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 Q3ZCU0 254 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 ZNF114Q8NC26 417 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 ACTR3CQ9C0K3 210 aaPredicted RBP13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 KLK10O43240 276 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 COX5AP20674 150 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 GCH1P30793 250 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 MSMO1Q15800 293 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 FIP1L1Q6UN15 594 aaKnown RBP13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 WDR31Q8NA23 367 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 FAM234AQ9H0X4 552 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 SPTA1P02549 2419 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 TMEM30CPA0ZSE6 113 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 SOX15O60248 233 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 EDDM3BP56851 147 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 FAM78BQ5VT40 261 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 H2BFWTQ7Z2G1 175 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 Q8IYB0 196 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 Q8N7P7 452 aa13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 QTRT1Q9BXR0 403 aaKnown RBP13.54□□□□□ -0.24
NKX3-1-201ENST00000380871 HNF1AP20823 631 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 CST9LP1Q5W188 147 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 OR2Z1Q8NG97 314 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 OR2T10Q8NGZ9 312 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 NEIL1Q96FI4 390 aaPredicted RBP13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 PATZ1Q9HBE1 687 aaKnown RBP13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 PSG11Q9UQ72 335 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 M0R1B8 84 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 DVL1O14640 695 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 C1QTNF9P0C862 333 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 INO80CQ6PI98 192 aaPredicted RBP13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 LRP11Q86VZ4 500 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 VKORC1L1Q8N0U8 176 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 ZADH2Q8N4Q0 377 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 ZNF709Q8N972 641 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 TMEM170AQ8WVE7 144 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 PROCRQ9UNN8 238 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 PKDREJQ9NTG1 2253 aa13.53□□□□□ -0.24
NKX3-1-201ENST00000380871 IGHV3OR15-7A0A075B7D8 119 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 GNB1P62873 340 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 SSX2Q16385 188 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 ACTL10Q5JWF8 245 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 OR13A1Q8NGR1 328 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 SDSLQ96GA7 329 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 PLCE1Q9P212 2302 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 C15orf62A8K5M9 175 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 A8MWP6 167 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 NDUFB4O95168 129 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 IFNA10P01566 189 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 OR4A8P0C604 315 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 CDC34P49427 236 aaPredicted RBP13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 TGIF2LYQ8IUE0 185 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 NINJ1Q92982 152 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 MANBALQ9NQG1 85 aa13.52□□□□□ -0.24
NKX3-1-201ENST00000380871 MARCH11A6NNE9 402 aa13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 IGHG3P01860 377 aa13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 OR9G9P0C7N8 305 aa13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 C11orf53Q8IXP5 236 aa13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 RNASEH2CQ8TDP1 164 aaKnown RBP13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 ZNF318Q5VUA4 2279 aa13.52□□□□□ -0.25
NKX3-1-201ENST00000380871 IL3RAP26951 378 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 FAM201AQ5SY85 155 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 LINC01551Q86U37 167 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 PRR33A8MZF0 331 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 PAX1P15863 534 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 CD82P27701 267 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 DNLZQ5SXM8 178 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 TCF23Q7RTU1 214 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 OR6C3Q9NZP0 311 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 HCFC1P51610 2035 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 A0A0U1RQK1 487 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 GGCTO75223 188 aaKnown RBP13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 CLDN14O95500 239 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 CATR1Q13166 79 aa13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 COA6Q5JTJ3 125 aaKnown RBP13.51□□□□□ -0.25
NKX3-1-201ENST00000380871 TRBV20OR9-2A0A075B6H5 130 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 USF2Q15853 346 aaPredicted RBP13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 ATP6V1FQ16864 119 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 MRPL41Q8IXM3 137 aaKnown RBP13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 LRRC29Q8WV35 223 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 ZNF292O60281 2723 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 SLC31A2O15432 143 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 RBFOX2O43251 390 aaKnown RBP eCLIP13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 NUPR1O60356 82 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 MBP02144 154 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 ZNF718Q3SXZ3 478 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 TMEM256Q8N2U0 113 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 STARD4Q96DR4 205 aa13.5□□□□□ -0.25
NKX3-1-201ENST00000380871 ZGRF1Q86YA3 2104 aa13.49□□□□□ -0.25
NKX3-1-201ENST00000380871 OOEPA6NGQ2 149 aa13.49□□□□□ -0.25
NKX3-1-201ENST00000380871 IQCF6A8MYZ5 107 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms