RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 RANP62826 216 aaKnown RBP11.15□□□□□ -0.62
NPHP4-203ENST00000378169 JPT1Q9UK76 154 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 NCOR2Q9Y618 2525 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 IGKV3-7A0A075B6H7 116 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 TRAV24A0A0B4J272 114 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 E9PLN8 166 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 NDUFB4O95168 129 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 MMP7P09237 267 aaPredicted RBP11.15□□□□□ -0.62
NPHP4-203ENST00000378169 RPL8P62917 257 aaKnown RBP11.15□□□□□ -0.62
NPHP4-203ENST00000378169 RNF115Q9Y4L5 304 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 KCNMB2Q9Y691 235 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 FREM1Q5H8C1 2179 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 AP4M1O00189 453 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 GATCO43716 136 aaKnown RBP11.15□□□□□ -0.62
NPHP4-203ENST00000378169 DIRC2Q96SL1 478 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 IDI2-AS1Q9NZ38 188 aa11.15□□□□□ -0.62
NPHP4-203ENST00000378169 IL18BPO95998 194 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 RPL27AP46776 148 aaKnown RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 B3GALT5-AS1P59052 145 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 DHRS7BQ6IAN0 325 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 MUC15Q8N387 334 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 IL22RA2Q969J5 263 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 TMPRSS5Q9H3S3 457 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 PGA5P0DJD9 388 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 EGR1P18146 543 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 HSPE1P61604 102 aaKnown RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 HGFACQ04756 655 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 FAM222BQ8WU58 562 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 RASL11BQ9BPW5 248 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 CHRDL1Q9BU40 450 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 ATXN7O15265 892 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 LILRA1O75019 489 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 PMS2P11Q13670 270 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 MRPL54Q6P161 138 aaKnown RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 TCTEX1D1Q8N7M0 179 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 LSM10Q969L4 123 aaKnown RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 FUT9Q9Y231 359 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 ANKHD1Q8IWZ3 2542 aaKnown RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 MALRD1Q5VYJ5 2156 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 HELTA6NFD8 242 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 F2RL2O00254 374 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 REG1AP05451 166 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 SLC35B1P78383 322 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 PRB3Q04118 309 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-203ENST00000378169 BSPH1Q075Z2 132 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 C10orf113Q5VZT2 155 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 ATRAIDQ6UW56 229 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 POM121Q96HA1 1249 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 SRD5A3Q9H8P0 318 aa11.14□□□□□ -0.63
NPHP4-203ENST00000378169 MED13Q9UHV7 2174 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 IQCF6A8MYZ5 107 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 CXorf1O96002 111 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 BRS3P32247 399 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 OR8I2Q8N0Y5 310 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 QTRT1Q9BXR0 403 aaKnown RBP11.13□□□□□ -0.63
NPHP4-203ENST00000378169 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 CEACAM18A8MTB9 384 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 PTBP3O95758 552 aaKnown RBP11.13□□□□□ -0.63
NPHP4-203ENST00000378169 LINC00869P0C866 280 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 SSX7Q7RTT5 188 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 FAM90A26D6RGX4 464 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 SUPT4H1P63272 117 aaKnown RBP11.13□□□□□ -0.63
NPHP4-203ENST00000378169 ECSCRQ19T08 205 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 C1orf162Q8NEQ5 155 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-203ENST00000378169 ZNF596Q8TC21 504 aa11.13□□□□□ -0.63
NPHP4-203ENST00000378169 IFNL4K9M1U5 179 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 SS18L1O75177 396 aaPredicted RBP11.12□□□□□ -0.63
NPHP4-203ENST00000378169 HIST3H3Q16695 136 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 RNFT1Q5M7Z0 435 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 SGMS2Q8NHU3 365 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 IGHV1-69-2A0A0G2JMI3 117 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 SRSF10O75494 262 aaKnown RBP11.12□□□□□ -0.63
NPHP4-203ENST00000378169 HSPB1P04792 205 aaKnown RBP11.12□□□□□ -0.63
NPHP4-203ENST00000378169 RND2P52198 227 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 TRBV6-7A0A0A0MS04 114 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 WDR82Q6UXN9 313 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 LRP11Q86VZ4 500 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 TMEM171Q8WVE6 324 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 PRO1933Q9H354 126 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 IGF2RP11717 2491 aa11.12□□□□□ -0.63
NPHP4-203ENST00000378169 KBTBD11O94819 623 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 CSRP1P21291 193 aaKnown RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 LGALS7P47929 136 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 TOMM20LQ6UXN7 152 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 FAM57AQ8TBR7 257 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 SMIM8Q96KF7 97 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 PPIAL4CA0A0B4J2A2 164 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 B4DEV8 164 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 PPIAL4GP0DN37 164 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 S100A4P26447 101 aaKnown RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 OTX1P32242 354 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 KIR2DL2P43627 348 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 C1QTNF12Q5T7M4 302 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 WDR25Q64LD2 544 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 LURAP1Q96LR2 239 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 CLEC5AQ9NY25 188 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 C1RLQ9NZP8 487 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 METTL1Q9UBP6 276 aaKnown RBP11.11□□□□□ -0.63
NPHP4-203ENST00000378169 SLC31A2O15432 143 aa11.11□□□□□ -0.63
NPHP4-203ENST00000378169 PDE6DO43924 150 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms