RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 CRIPAKQ8N1N5 446 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 TMEM101Q96IK0 257 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 VGLL1Q99990 258 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 RBM38Q9H0Z9 239 aaKnown RBP8.36□□□□□ -1.07
COL4A6-202ENST00000372216 TDRD6O60522 2096 aaKnown RBP8.36□□□□□ -1.07
COL4A6-202ENST00000372216 ZP3P21754 424 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 SPACA3Q8IXA5 215 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 IL19Q9UHD0 177 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 PAM16Q9Y3D7 125 aa8.36□□□□□ -1.07
COL4A6-202ENST00000372216 PGPA6NDG6 321 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A10PA6NDY2 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A18PA6NE21 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A16PA6NEW6 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A20PA6NIJ5 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A8PA6NJQ4 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A7PA6NKC0 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A22PA8MWA6 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A12PA8MX19 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A5PA8MXJ8 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A23PA8MXZ1 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 DIRC3C9JPN6 131 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 H0Y980 276 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A15PP0C7V4 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A13PP0C7W8 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A14PP0C7W9 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 FAM90A24PP0C7X0 464 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 CD59P13987 128 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 CD24P25063 80 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 SAXO1Q8IYX7 474 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 OR5P3Q8WZ94 311 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 GPR61Q9BZJ8 451 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 RAMP1O60894 148 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 MRPL14Q6P1L8 145 aaKnown RBP8.35□□□□□ -1.07
COL4A6-202ENST00000372216 CLEC7AQ9BXN2 247 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 TCRBV4S1A1TA0A5B7 111 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 LINC00869P0C866 280 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 RPL8P62917 257 aaKnown RBP8.35□□□□□ -1.07
COL4A6-202ENST00000372216 CLEC19AQ6UXS0 136 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 OR4X2Q8NGF9 303 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 TMEM191AQ9H0A3 160 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 GP6Q9HCN6 339 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 RCC1P18754 421 aaPredicted RBP8.35□□□□□ -1.07
COL4A6-202ENST00000372216 MFAP2P55001 183 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 MFAP4P55083 255 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 COL5A1-AS1Q5SY13 56 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 BPIFA4PQ86YQ2 179 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 WDYHV1Q96HA8 205 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 PXMP4Q9Y6I8 212 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 PITX3O75364 302 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 IGKV1D-33P01593 117 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 IGKV1-33P01594 117 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 RELQ04864 619 aaPredicted RBP8.35□□□□□ -1.07
COL4A6-202ENST00000372216 STHQ8IWL8 128 aa8.35□□□□□ -1.07
COL4A6-202ENST00000372216 GLIPR1P48060 266 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 IMMP1LQ96LU5 166 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 WNT10AQ9GZT5 417 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 RBKSQ9H477 322 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 SCN5AQ14524 2016 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 CLDN34H7C241 214 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 CEACAM4O75871 244 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 CECR9P0C854 216 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 FAM159AQ6UWV7 190 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 SLC35E3Q7Z769 313 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 OR11H7Q8NGC8 314 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 ZNF646O15015 1829 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-202ENST00000372216 ISLRO14498 428 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 CXCL3P19876 107 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 BSXQ3C1V8 233 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 COLCA1Q6ZS62 124 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 MMD2Q8IY49 270 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 C9orf106Q8NAJ2 232 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 SLC25A33Q9BSK2 321 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 TMEM106BQ9NUM4 274 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 SOX21Q9Y651 276 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-202ENST00000372216 ZNF729A6NN14 1252 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-202ENST00000372216 PGLYRP1O75594 196 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-202ENST00000372216 IGHV1-2P23083 117 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 NPBWR2P48146 333 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 OR9G1Q8NH87 305 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 LCTP09848 1927 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 MTCL1Q9Y4B5 1905 aaKnown RBP8.34□□□□□ -1.07
COL4A6-202ENST00000372216 EFNB1P98172 346 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 HIST1H4GQ99525 98 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 JPT1Q9UK76 154 aa8.34□□□□□ -1.07
COL4A6-202ENST00000372216 TRBV5-7A0A0A0MS05 114 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 M0R381 172 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 NPPCP23582 126 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 UBE2V2Q15819 145 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 OR5AU1Q8NGC0 362 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 VAX1Q5SQQ9 334 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 OR2T10Q8NGZ9 312 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 TP53RKQ96S44 253 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 PSCAO43653 123 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 PDE6DO43924 150 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 HOXA6P31267 233 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 RUNX1Q01196 453 aa8.33□□□□□ -1.08
COL4A6-202ENST00000372216 ZNF418Q8TF45 676 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-202ENST00000372216 NEU4Q8WWR8 484 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-202ENST00000372216 DICER1Q9UPY3 1922 aaKnown RBP8.33□□□□□ -1.08
COL4A6-202ENST00000372216 MYOFQ9NZM1 2061 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms