RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 TSPOP30536 169 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 HIST1H1AQ02539 215 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 GGACTQ9BVM4 153 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 CT62P0C5K7 136 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 ATOH7Q8N100 152 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 RARRES2Q99969 163 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 HDHD3Q9BSH5 251 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 VWA8A3KMH1 1905 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 USF3Q68DE3 2245 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 NPFFO15130 113 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 SFTPCP11686 197 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 TCF24Q7RTU0 167 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 DDB2Q92466 427 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 AQP3Q92482 292 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 NPVFQ9HCQ7 196 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 A8MXK9 166 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 MDP1Q86V88 176 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF414Q96IQ9 312 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 PRELID3AQ96N28 172 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 FLRT3Q9NZU0 649 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 HILPDAQ9Y5L2 63 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 WISP3O95389 354 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 FXYD3Q14802 87 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 MBNL2Q5VZF2 373 aaKnown RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 DUX5Q96PT3 197 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 A0A1W2PPC1 479 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 LIFP15018 202 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 RHBDD2Q6NTF9 364 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 OR5A1Q8NGJ0 315 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 LPAR2Q9HBW0 351 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 R4GN57 208 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 TSC2P49815 1807 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 NYNRINQ9P2P1 1898 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 SNRPD3P62318 126 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 AMER3Q8N944 861 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 RASL10BQ96S79 203 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 SBF2Q86WG5 1849 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 MIC13Q5XKP0 118 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 INO80CQ6PI98 192 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 BGLAPP02818 100 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 FCGR2BP31994 310 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 DCAF12L2Q5VW00 463 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 RTN4RQ9BZR6 473 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 YBX2Q9Y2T7 364 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 SNRPCP09234 159 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 FGF5P12034 268 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 EFNB2P52799 333 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 MARS2Q96GW9 593 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 FOXJ2Q9P0K8 574 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 RIF1Q5UIP0 2472 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 PSMB11A5LHX3 300 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 ZP4Q12836 540 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 PAPPA-AS1Q5QFB9 102 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM101Q96IK0 257 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 CLDN14O95500 239 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 CELA2BP08218 269 aaPredicted RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 FBXW9Q5XUX1 488 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 HCP5Q6MZN7 132 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 SAXO1Q8IYX7 474 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 KCNS1Q96KK3 526 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 KCNK7Q9Y2U2 307 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 UBR3Q6ZT12 1888 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 ADRA2AP08913 450 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 ID4P47928 161 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 ZNF124Q15973 351 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 BHLHA9Q7RTU4 235 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 OR13C6PQ8NH95 151 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 ATP5G2Q06055 141 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 APOBEC4Q8WW27 367 aaKnown RBP6.32□□□□□ -1.4
SYNE1-208ENST00000367256 UCN2Q96RP3 112 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 LINC00470Q9BZP3 86 aa6.32□□□□□ -1.4
SYNE1-208ENST00000367256 A0A1B0GW15 77 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 NPIPB13A6NJU9 1138 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 NPIPB4C9JG80 1138 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 AGAP20933 346 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 PRDX2P32119 198 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 TUBA4BQ9H853 241 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 C1QTNF9BB2RNN3 333 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 TRGC1P0CF51 173 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 PRF1P14222 555 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 MEF2CQ06413 473 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 PIMREGQ9BSJ6 248 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 TLNRD1Q9H1K6 362 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 TRBV5-7A0A0A0MS05 114 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 A1L4Q6 167 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 HBBP68871 147 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 OR52M1Q8NGK5 317 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 hCG_38984A0A1B0GV85 526 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 C21orf140B9A014 251 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 C16orf97H3BN30 126 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 H3BRM9 83 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 RPL27AP46776 148 aaKnown RBP6.31□□□□□ -1.4
SYNE1-208ENST00000367256 CEACAM21Q3KPI0 293 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 SPANXDQ9BXN6 97 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 JKAMPQ9P055 326 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 GPR132Q9UNW8 380 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 GDF9O60383 454 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 HKR1P10072 659 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 LIMS1P48059 325 aa6.31□□□□□ -1.4
SYNE1-208ENST00000367256 IFITM2Q01629 132 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms