RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 CDX1P47902 265 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-203ENST00000361654 DEFB121Q5J5C9 76 aa9.35□□□□□ -0.91
CLIP1-203ENST00000361654 SSC4DQ8WTU2 575 aa9.35□□□□□ -0.91
CLIP1-203ENST00000361654 VGLL1Q99990 258 aa9.35□□□□□ -0.91
CLIP1-203ENST00000361654 SMCHD1A6NHR9 2005 aa9.35□□□□□ -0.91
CLIP1-203ENST00000361654 SHANK3Q9BYB0 1731 aa9.35□□□□□ -0.91
CLIP1-203ENST00000361654 PROB1E7EW31 1015 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 CD74P04233 296 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ATP6V0CP27449 155 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ARPC1AQ92747 370 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 TMEM54Q969K7 222 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 TCF19Q9Y242 345 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 RP1P56715 2156 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 PGLYRP1O75594 196 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 EMP1P54849 157 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 IGLV3-21P80748 117 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 IBA57Q5T440 356 aaKnown RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 CFAP161Q6P656 301 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 OR13C6PQ8NH95 151 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 IL36RNQ9UBH0 155 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 IGLV1-36A0A0B4J1U3 117 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ZNF815PA8K554 130 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 IGLV3-19P01714 112 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 HKR1P10072 659 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ERASQ7Z444 233 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 FAM90A1Q86YD7 464 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 NPIPB13A6NJU9 1138 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 NPIPB4C9JG80 1138 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 TIAF1O95411 115 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 REG1AP05451 166 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ZNF708P17019 499 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 OR5P3Q8WZ94 311 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 PRELID3AQ96N28 172 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 C21orf62Q9NYP8 219 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 LOC390937A0A1W2PQ73 354 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 GHRHP01286 108 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 SNRPCP09234 159 aaKnown RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 FAM166AQ6J272 317 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 LEAP2Q969E1 77 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 LHFPL6Q9Y693 200 aa9.34□□□□□ -0.91
CLIP1-203ENST00000361654 ZFC3H1O60293 1989 aaKnown RBP9.34□□□□□ -0.91
CLIP1-203ENST00000361654 TRBV5-3A0A0A0MS03 114 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 IGHV2OR16-5A0A0B4J2B6 119 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 ASIPP42127 132 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 DLK1P80370 383 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 C10orf111Q8N326 155 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 C3orf56Q8N813 242 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 MRPS18CQ9Y3D5 142 aaKnown RBP9.33□□□□□ -0.92
CLIP1-203ENST00000361654 STRCQ7RTU9 1775 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 CENPVL1A0A0U1RR11 272 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 PSMB11A5LHX3 300 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 CACNG7P62955 275 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 RPL24P83731 157 aaKnown RBP9.33□□□□□ -0.92
CLIP1-203ENST00000361654 SNAI3Q3KNW1 292 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 LEMD1Q68G75 181 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 SMDT1Q9H4I9 107 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 TUBD1Q9UJT1 453 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 KLHDC2Q9Y2U9 406 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 IGHV3-35A0A0C4DH35 117 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 AP4M1O00189 453 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 IRF3Q14653 427 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 NSUN5P1Q3KNT7 163 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 SEMA5BQ9P283 1151 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 SUCLG1P53597 346 aaKnown RBP9.33□□□□□ -0.92
CLIP1-203ENST00000361654 CYB5R2Q6BCY4 276 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 LAIR2Q6ISS4 152 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 NPIPB3Q92617 1050 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 FBXL15Q9H469 300 aa9.33□□□□□ -0.92
CLIP1-203ENST00000361654 SEC16AO15027 2179 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 DUSP14O95147 198 aaKnown RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 SMIM10L1P0DMW3 83 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 TMEM177Q53S58 311 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 ZNRF1Q8ND25 227 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 GATAD1Q8WUU5 269 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 SMIM10Q96HG1 83 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 TP53RKQ96S44 253 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 RPRMQ9NS64 109 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 MRPS18AQ9NVS2 196 aaKnown RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 FOXI3A8MTJ6 420 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 PAX1P15863 534 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 LTBRP36941 435 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 NMUP48645 174 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 MIC13Q5XKP0 118 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 ZNF880Q6PDB4 577 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 REC114Q7Z4M0 266 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 ZNHIT1O43257 154 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 TBR1Q16650 682 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 ACP7Q6ZNF0 438 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 SRSF12Q8WXF0 261 aaKnown RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 ALX4Q9H161 411 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-203ENST00000361654 NPIPB9F8W1W9 429 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 NPIPB7O75200 414 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 DNAL4O96015 105 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 BCL2P10415 239 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 TMEM252Q8N6L7 170 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 C2orf88Q9BSF0 95 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 CDK5RAP2Q96SN8 1893 aa9.32□□□□□ -0.92
CLIP1-203ENST00000361654 CRPP02741 224 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 754.8 ms