RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LGALS7P47929 136 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 KCNS1Q96KK3 526 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 TMEM70Q9BUB7 260 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 TCF19Q9Y242 345 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 IGKV3-7A0A075B6H7 116 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 A0A087WV48 116 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 NUDT3O95989 172 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 DNLZQ5SXM8 178 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 HES7Q9BYE0 225 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 WDR54Q9H977 334 aa16.71■□□□□ 0.26
CCDC88B-202ENST00000356786 RND2P52198 227 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 HCP5Q6MZN7 132 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 RRHO14718 337 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 RSPO4Q2I0M5 234 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 SLC22A18ASQ8N1D0 253 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 OTOFQ9HC10 1997 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 RPL27AP46776 148 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 MMDQ15546 238 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 HIST1H4GQ99525 98 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 NABP2Q9BQ15 211 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 ABCA1O95477 2261 aa16.7■□□□□ 0.26
CCDC88B-202ENST00000356786 DOPEY2Q9Y3R5 2298 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 UCP1P25874 307 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 BMI1P35226 326 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 ZNF658BQ4V348 819 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 MIEN1Q9BRT3 115 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 NPIPB13A6NJU9 1138 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 NPIPB4C9JG80 1138 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 NIT1Q86X76 327 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 PKIBQ9C010 78 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 ZNF430Q9H8G1 570 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 UCP2P55851 309 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 RPL8P62917 257 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 SRSF12Q8WXF0 261 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 IGHMP01871 453 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 CA7P43166 264 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 TNFRSF19Q9NS68 423 aa16.69■□□□□ 0.26
CCDC88B-202ENST00000356786 MYO16Q9Y6X6 1858 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 TMEM229AB2RXF0 380 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 SAXO1Q8IYX7 474 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 REG4Q9BYZ8 158 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 IGKV1D-43A0A0B4J1Z2 117 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 H7C2G1 150 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 RIPPLY2Q5TAB7 128 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 STPG3Q8N7X2 389 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 ST6GALNAC6Q969X2 333 aa16.68■□□□□ 0.26
CCDC88B-202ENST00000356786 JOSD1Q15040 202 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 CALHM1Q8IU99 346 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 SMRP1Q8NCR6 262 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 TM2D1Q9BX74 207 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 NPCDR1Q9BY65 106 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 IL36BQ9NZH7 164 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 ZNF256Q9Y2P7 627 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 HEPN1Q6WQI6 88 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 ZNF646O15015 1829 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 GAS1P54826 345 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 ICAM4Q14773 271 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 VKORC1L1Q8N0U8 176 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 OR5R1Q8NH85 324 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 CLEC1BQ9P126 229 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 ODAMA1E959 279 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 RPL23P62829 140 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 LAMTOR2Q9Y2Q5 125 aa16.67■□□□□ 0.26
CCDC88B-202ENST00000356786 LOC390937A0A1W2PQ73 354 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 DLL1O00548 723 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 C2orf83Q53S99 150 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 FAM19A2Q8N3H0 131 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 ARL6IP6Q8N6S5 226 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 CCL13Q99616 98 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 SMOC1Q9H4F8 434 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 KIF26BQ2KJY2 2108 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 H3BTX0 84 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 LDLRAD4O15165 306 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 LIPFP07098 398 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 IGLV3-21P80748 117 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 WNT5BQ9H1J7 359 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 PRDM13Q9H4Q3 707 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 RAB1CQ92928 201 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 HIST1H2BLQ99880 126 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 TMEM74BQ9NUR3 256 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 IGHV3-72A0A0B4J1Y9 119 aa16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 IGFBP3P17936 291 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 SLC25A10Q9UBX3 287 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-202ENST00000356786 OR51G1Q8NGK1 321 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 TMEM208Q9BTX3 173 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 SPTBN1Q01082 2364 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 SNAI2O43623 268 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 SERF1AO75920 110 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 ATP5G3P48201 142 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 C1RLQ9NZP8 487 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 TMEM170AQ8WVE7 144 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 PRDM14Q9GZV8 571 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 FOXD3Q9UJU5 478 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 PRR32B1ATL7 298 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 ARF6P62330 175 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 CCL8P80075 99 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 P2RY6Q15077 328 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 TMEM136Q6ZRR5 245 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 ALKBH7Q9BT30 221 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms