RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RRHO14718 337 aa17.63■□□□□ 0.41
SDC3-202ENST00000339394 TAS2R31P59538 309 aa17.63■□□□□ 0.41
SDC3-202ENST00000339394 RPL15P61313 204 aaKnown RBP17.63■□□□□ 0.41
SDC3-202ENST00000339394 NUBP2Q9Y5Y2 271 aa17.63■□□□□ 0.41
SDC3-202ENST00000339394 SLC25A17O43808 307 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 HRASP01112 189 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 UCP1P25874 307 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 PPP1R1AQ13522 171 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 C5orf64Q2M2E5 130 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 TAF15Q92804 592 aaKnown RBP eCLIP17.62■□□□□ 0.41
SDC3-202ENST00000339394 RHOVQ96L33 236 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 TMEM222Q9H0R3 208 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 FBXL15Q9H469 300 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 SH2D7A6NKC9 451 aaPredicted RBP17.62■□□□□ 0.41
SDC3-202ENST00000339394 SPDEFO95238 335 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 IGKV1-39P01597 117 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 IGKV1D-39P04432 117 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 H2AFB2P0C5Z0 115 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 NQO2P16083 231 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 VAMP1P23763 118 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 UBE2MP61081 183 aaKnown RBP17.62■□□□□ 0.41
SDC3-202ENST00000339394 UBE2KP61086 200 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 TRIM16LQ309B1 348 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 ZFAND2BQ8WV99 257 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 RASL11BQ9BPW5 248 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 NPFFR1Q9GZQ6 430 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 BEX1Q9HBH7 125 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 COMMD9Q9P000 198 aa17.62■□□□□ 0.41
SDC3-202ENST00000339394 METTL1Q9UBP6 276 aaKnown RBP17.62■□□□□ 0.41
SDC3-202ENST00000339394 CDS2O95674 445 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 KRASP01116 189 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 CRYBA1P05813 215 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 OR4E1P0C645 316 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 SAA1P0DJI8 122 aaPredicted RBP17.61■□□□□ 0.41
SDC3-202ENST00000339394 RPA2P15927 270 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 PLGLAQ15195 96 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 PLET1Q6UQ28 207 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 SSX9Q7RTT3 188 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 AIFM2Q9BRQ8 373 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 ALX4Q9H161 411 aaPredicted RBP17.61■□□□□ 0.41
SDC3-202ENST00000339394 SIGLEC9Q9Y336 463 aa17.61■□□□□ 0.41
SDC3-202ENST00000339394 MARCH11A6NNE9 402 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 PTTG1O95997 202 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 CRYGBP07316 175 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 ANXA3P12429 323 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 RAB25P57735 213 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 RELBQ01201 579 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 TMEM187Q14656 261 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 VMA21Q3ZAQ7 101 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 LIN54Q6MZP7 749 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 Q6ZS46 218 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 R3HDM4Q96D70 268 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 TPSG1Q9NRR2 321 aa17.6■□□□□ 0.41
SDC3-202ENST00000339394 SFT2D2O95562 160 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 G6PCP35575 357 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 MECP2P51608 486 aaKnown RBP17.59■□□□□ 0.41
SDC3-202ENST00000339394 POU2AF1Q16633 256 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 C4orf46Q504U0 113 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 TEX45Q8NA69 505 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 LHFPL5Q8TAF8 219 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 PRR13Q9NZ81 148 aa17.59■□□□□ 0.41
SDC3-202ENST00000339394 FCN1O00602 326 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 HLA-AP01891 365 aaKnown RBP17.58■□□□□ 0.41
SDC3-202ENST00000339394 SPNP16150 400 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 DHRS2Q13268 280 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 OR4A47Q6IF82 309 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 Q6ZSV7 163 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 PPP1R27Q86WC6 154 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 DMBX1Q8NFW5 382 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 VSTM2AQ8TAG5 236 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 SEC22AQ96IW7 307 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 TMEM56Q96MV1 263 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 CLCC1Q96S66 551 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 TMEM56-RWDD3S4R434 201 aa17.58■□□□□ 0.41
SDC3-202ENST00000339394 C2CD3Q4AC94 2353 aa17.58■□□□□ 0.4
SDC3-202ENST00000339394 C9orf170A2RU37 121 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 OR2A4O95047 310 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 ERVK-16P61578 105 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 PJVKQ0ZLH3 352 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 RGS21Q2M5E4 152 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 PUSL1Q8N0Z8 303 aaKnown RBP17.57■□□□□ 0.4
SDC3-202ENST00000339394 CASTOR1Q8WTX7 329 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 OR2A7Q96R45 310 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 MARVELD1Q9BSK0 173 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 PRSS22Q9GZN4 317 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 TSPAN9O75954 239 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 HLA-DRB1P01911 266 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 ANKRD55Q3KP44 614 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 C9orf152Q5JTZ5 239 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 ZNF695Q8IW36 515 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 SELENOHQ8IZQ5 122 aaKnown RBP17.57■□□□□ 0.4
SDC3-202ENST00000339394 RANBP3Q9H6Z4 567 aaPredicted RBP17.57■□□□□ 0.4
SDC3-202ENST00000339394 ZNF702PQ9H963 129 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 TMEM140Q9NV12 185 aa17.57■□□□□ 0.4
SDC3-202ENST00000339394 ATRQ13535 2644 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 INMT-MINDY4F8WBC2 141 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 IL6RP08887 468 aaPredicted RBP17.56■□□□□ 0.4
SDC3-202ENST00000339394 MRGPRG-AS1Q2M3A8 158 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 TMEM268Q5VZI3 342 aa17.56■□□□□ 0.4
SDC3-202ENST00000339394 LYG2Q86SG7 212 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms