RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OR2F1Q13607 317 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 LRRC37A5PQ49AS3 106 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 ZNF429Q86V71 674 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 OR1S1Q8NH92 325 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 LHX4Q969G2 390 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 RNF5Q99942 180 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 BET1LQ9NYM9 111 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 HSPB7Q9UBY9 170 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 RNF222A6NCQ9 220 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 E5RGE8 158 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 C4BPBP20851 252 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 CD1BP29016 333 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 LGALS7P47929 136 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 S100A10P60903 97 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 PRB3Q04118 309 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 LGALSLQ3ZCW2 172 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 CXorf66Q5JRM2 361 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 ACOT7LQ6ZUV0 252 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 ZNF546Q86UE3 836 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 PUSL1Q8N0Z8 303 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 DMBX1Q8NFW5 382 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 OR52E5Q8NH55 327 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 GRPEL2Q8TAA5 225 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 CFHR4Q92496 578 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 FLYWCH2Q96CP2 140 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 AJUBAQ96IF1 538 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 AQP10Q96PS8 301 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 TMEM140Q9NV12 185 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 OR5AC2Q9NZP5 309 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 NSG2Q9Y328 171 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 HSPB11Q9Y547 144 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 MED13LQ71F56 2210 aa12.04□□□□□ -0.48
CCDC88C-202ENST00000334448 ARPC5O15511 151 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 LY86O95711 162 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 CXCL2P19875 107 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 P2RY1P47900 373 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 TAS2R30P59541 319 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 RELBQ01201 579 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 IZUMO4Q1ZYL8 232 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 OR4A47Q6IF82 309 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 KCNRGQ8N5I3 272 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 OR4A5Q8NH83 315 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 VSTM2AQ8TAG5 236 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 MALSU1Q96EH3 234 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 HARBI1Q96MB7 349 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 RAB40CQ96S21 281 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 MFFQ9GZY8 342 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 FOXA2Q9Y261 457 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 AUP1Q9Y679 476 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 HECTD1Q9ULT8 2610 aa12.03□□□□□ -0.48
CCDC88C-202ENST00000334448 A0A0D9SG52 128 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 CENPVL3A0A0U1RRI6 287 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 C15orf61A6NNL5 157 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 SRRM4A7MD48 611 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 RNF223E7ERA6 249 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 H7C2Y5 167 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 SPDEFO95238 335 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 IGLV2-23P01705 113 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 OR9G9P0C7N8 305 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 UBE2KP61086 200 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 POLR2GP62487 172 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 TNFRSF9Q07011 255 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 EBI3Q14213 229 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 TMEM249Q2WGJ8 235 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 LHFPL4Q7Z7J7 247 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 TMEM167AQ8TBQ9 72 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 DCUN1D4Q92564 292 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 Q96MF0 132 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 MS4A7Q9GZW8 240 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 TMEM14BQ9NUH8 114 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 HIF1ANQ9NWT6 349 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 LSM5Q9Y4Y9 91 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 PDZD2O15018 2839 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 ARHGAP32A7KAX9 2087 aa12.02□□□□□ -0.49
CCDC88C-202ENST00000334448 IGHV1-69DA0A0B4J2H0 117 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 L7N2F9 121 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 UPK2O00526 184 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 TIMM23O14925 209 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 NPFFO15130 113 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 SHOXO15266 292 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 MED6O75586 246 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 VENTXO95231 258 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 SCGB1D2O95969 90 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 IGHV1-69P01742 117 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 SAA1P0DJI8 122 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 IGHV4-31P0DP07 118 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 PVALBP20472 110 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 LGALS4P56470 323 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 GPR157Q5UAW9 335 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 INO80EQ8NBZ0 244 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 PRNDQ9UKY0 176 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 ZNF257Q9Y2Q1 563 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 WSB1Q9Y6I7 421 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 CSMD2Q7Z408 3487 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 VPS13CQ709C8 3753 aa12.01□□□□□ -0.49
CCDC88C-202ENST00000334448 ITPR2Q14571 2701 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 SYNGR2O43760 224 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 KBTBD11O94819 623 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms