RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LCNL1Q6ZST4 164 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 COMMD1Q8N668 190 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 OR52I2Q8NH67 350 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 FCAMRQ8WWV6 532 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 DDB2Q92466 427 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 SNAPC3Q92966 411 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 NUDT15Q9NV35 164 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 MEIS3P1A6NDR6 274 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 LINC00473A8K010 186 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 G3V318 75 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 TUSC2O75896 110 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 PPIFP30405 207 aaKnown RBP12.4□□□□□ -0.42
CLN3-201ENST00000333496 DUTP33316 252 aaKnown RBP12.4□□□□□ -0.42
CLN3-201ENST00000333496 RPS16P62249 146 aaKnown RBP12.4□□□□□ -0.42
CLN3-201ENST00000333496 RPL23AP62750 156 aaKnown RBP12.4□□□□□ -0.42
CLN3-201ENST00000333496 KLF9Q13886 244 aaPredicted RBP12.4□□□□□ -0.42
CLN3-201ENST00000333496 FBXO7Q9Y3I1 522 aa12.4□□□□□ -0.42
CLN3-201ENST00000333496 TNCP24821 2201 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 IGLV2-23P01705 113 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 IGHG4P01861 327 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 RPLP1P05386 114 aaKnown RBP12.39□□□□□ -0.43
CLN3-201ENST00000333496 VDAC1P21796 283 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 THBS3P49746 956 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 LUMP51884 338 aaPredicted RBP12.39□□□□□ -0.43
CLN3-201ENST00000333496 ZNF767PQ75MW2 155 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 C1QL4Q86Z23 238 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 ZNF645Q8N7E2 425 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 RNF152Q8N8N0 203 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 BVESQ8NE79 360 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 FLYWCH2Q96CP2 140 aaKnown RBP12.39□□□□□ -0.43
CLN3-201ENST00000333496 PARP11Q9NR21 331 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 TPSG1Q9NRR2 321 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 ZFP57Q9NU63 452 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 METTL1Q9UBP6 276 aaKnown RBP12.39□□□□□ -0.43
CLN3-201ENST00000333496 WSB1Q9Y6I7 421 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 DNAH3Q8TD57 4116 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 NOTCH3Q9UM47 2321 aa12.39□□□□□ -0.43
CLN3-201ENST00000333496 G3V4G9 280 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 PRAF2O60831 178 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 PF4V1P10720 104 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 EGR2P11161 476 aaPredicted RBP12.38□□□□□ -0.43
CLN3-201ENST00000333496 ANXA3P12429 323 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 PRSS3P35030 304 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 ARPC4P59998 168 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 CX3CL1P78423 397 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 DEFA6Q01524 100 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 FOXE3Q13461 319 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 PLGLAQ15195 96 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 ETV3LQ6ZN32 361 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 DEDD2Q8WXF8 326 aa12.38□□□□□ -0.43
CLN3-201ENST00000333496 TSNAXQ99598 290 aaKnown RBP12.38□□□□□ -0.43
CLN3-201ENST00000333496 TRAV6A0A075B6T7 132 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SRRM4A7MD48 611 aaKnown RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 SPDEFO95238 335 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 ELANEP08246 267 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 H2AFB2P0C5Z0 115 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 PSMB8P28062 276 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 CBX5P45973 191 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 CRIP2P52943 208 aaPredicted RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 RPL30P62888 115 aaKnown RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 TMEM177Q53S58 311 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 C19orf54Q5BKX5 351 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SAMD5Q5TGI4 173 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 ZNF660Q6AZW8 331 aaPredicted RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 C8orf86Q6ZUL3 223 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 WFDC9Q8NEX5 89 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 CLCC1Q96S66 551 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 ANAPC10Q9UM13 185 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 BOLA1Q9Y3E2 137 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SULT1C2O00338 296 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SLC25A17O43808 307 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 CRYGBP07316 175 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 OR5H8P0DN80 308 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 FCGR2CP31995 323 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SSBP2P81877 361 aaPredicted RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 TAGLNQ01995 201 aaKnown RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 EIF4EBP1Q13541 118 aaPredicted RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 FCN2Q15485 313 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 CXorf66Q5JRM2 361 aaPredicted RBP12.37□□□□□ -0.43
CLN3-201ENST00000333496 OR5AP2Q8NGF4 316 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 ADTRPQ96IZ2 230 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 HARBI1Q96MB7 349 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 SCPEP1Q9HB40 452 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 NECAP2Q9NVZ3 263 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 KLK11Q9UBX7 282 aa12.37□□□□□ -0.43
CLN3-201ENST00000333496 PRKDCP78527 4128 aaKnown RBP12.36□□□□□ -0.43
CLN3-201ENST00000333496 TRAV41A0A0B4J266 112 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 CA2P00918 260 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 IGLV1-40P01703 118 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 NAT1P18440 290 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 AADACP22760 399 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 LGALS7P47929 136 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 OXLD1Q5BKU9 147 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 ZNF562Q6V9R5 426 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 KLHL30-AS1Q8NEE0 82 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 GPX8Q8TED1 209 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 FAM103A1Q9BTL3 118 aaKnown RBP12.36□□□□□ -0.43
CLN3-201ENST00000333496 C20orf85Q9H1P6 137 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 KLK15Q9H2R5 256 aa12.36□□□□□ -0.43
CLN3-201ENST00000333496 MTFP1Q9UDX5 166 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms