RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ID3Q02535 119 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 TEX261Q6UWH6 196 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 ZNF48Q96MX3 618 aaPredicted RBP13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 PCGF1Q9BSM1 259 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 SIRPDQ9H106 197 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 ESM1Q9NQ30 184 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 SESN1Q9Y6P5 492 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 U3KQ87 197 aa13.35□□□□□ -0.27
PDLIM1-201ENST00000329399 K7EPK0 472 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 PITX3O75364 302 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 LIPFP07098 398 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 AKR1C2P52895 323 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 PRAMEF5Q5TYX0 476 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 DHRS7BQ6IAN0 325 aaPredicted RBP13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 C1orf122Q6ZSJ8 110 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 OR4S2Q8NH73 311 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 OR9G1Q8NH87 305 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 HEXA-AS1Q9H8Q6 139 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 NUP50Q9UKX7 468 aa13.34□□□□□ -0.27
PDLIM1-201ENST00000329399 RNF222A6NCQ9 220 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 H0YIZ8 118 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 M0R1X1 148 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 BCL2L11O43521 198 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 IGHV1-8P0DP01 117 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 PRRX1P54821 245 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 UBA52P62987 128 aaKnown RBP13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 BRD3OSQ6XYD6 125 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 Q8N7P7 452 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 OR8H1Q8NGG4 311 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 OR1S1Q8NH92 325 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 GPR146Q96CH1 333 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 ARPC5LQ9BPX5 153 aa13.33□□□□□ -0.28
PDLIM1-201ENST00000329399 TRAV40A0A0B4J280 105 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 M0R1W7 72 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 TSC22D2O75157 780 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 MED6O75586 246 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 IGKV1-39P01597 117 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 IGKV1D-39P04432 117 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 PPIAL4GP0DN37 164 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 ZNF137PP52743 207 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 ERVFRD-1P60508 538 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 RPL30P62888 115 aaKnown RBP13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 RUSC1-AS1Q66K80 236 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 PDZD9Q8IXQ8 264 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 LYG1Q8N1E2 194 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 PHYHIPLQ96FC7 376 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 C5orf30Q96GV9 206 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 RAB40CQ96S21 281 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 TMEM133Q9H2Q1 129 aa13.32□□□□□ -0.28
PDLIM1-201ENST00000329399 SAA2-SAA4A0A096LPE2 208 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 CENPVL3A0A0U1RRI6 287 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 MDFIC2A0A1B0GVS7 189 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 MEX3AA1L020 520 aaKnown RBP13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 J3QR06 171 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 WRBO00258 174 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 TOR1AO14656 332 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 TCF21O43680 179 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 GPR137BO60478 399 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 PROP1O75360 226 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 TOX4O94842 621 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 SAA2P0DJI9 122 aaPredicted RBP13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 CCL3L1P16619 93 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 RPL12P30050 165 aaKnown RBP13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 TAS2R30P59541 319 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 ZNF833PQ6ZTB9 187 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 ODF3L1Q8IXM7 274 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 KIR3DL3Q8N743 410 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 SIGLECL1Q8N7X8 197 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 ZNF680Q8NEM1 530 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 DDB2Q92466 427 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 GPHA2Q96T91 129 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 SLC25A31Q9H0C2 315 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 OR5AC2Q9NZP5 309 aa13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 LSM5Q9Y4Y9 91 aaKnown RBP13.31□□□□□ -0.28
PDLIM1-201ENST00000329399 LINC00473A8K010 186 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 SCAF4O95104 1147 aaKnown RBP13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 SCGB1D2O95969 90 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 HRASP01112 189 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 IGKV1-5P01602 117 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 P0C879 139 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 NQO2P16083 231 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 AP2S1P53680 142 aaPredicted RBP13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 ERVK-16P61578 105 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 VAMP2P63027 116 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 RTL8BQ17RB0 113 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 NCR3LG1Q68D85 454 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 H2BFWTQ7Z2G1 175 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 BEND2Q8NDZ0 799 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 DUX5Q96PT3 197 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 ZNF251Q9BRH9 671 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 ONECUT1Q9UBC0 465 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 UBQLN2Q9UHD9 624 aa13.3□□□□□ -0.28
PDLIM1-201ENST00000329399 SLC31A2O15432 143 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 MMP23AO75900 390 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 HILS1P60008 231 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 FAM53AQ6NSI3 398 aaPredicted RBP13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 ABHD12Q8N2K0 398 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 OR10X1Q8NGY0 326 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 STOML3Q8TAV4 291 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms