RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 DNAJC4Q9NNZ3 241 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 PGPA6NDG6 321 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 ZNF273Q14593 569 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 PUSL1Q8N0Z8 303 aaKnown RBP13.57□□□□□ -0.24
USP42-201ENST00000306177 TEX29Q8N6K0 151 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 C16orf92Q96LL3 132 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 TP53RKQ96S44 253 aa13.57□□□□□ -0.24
USP42-201ENST00000306177 RIF1Q5UIP0 2472 aaKnown RBP13.57□□□□□ -0.24
USP42-201ENST00000306177 CEACAM1P13688 526 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 TNFSF10P50591 281 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 ZNF146Q15072 292 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 ACP7Q6ZNF0 438 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 MYOZ3Q8TDC0 251 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 CD8AP01732 235 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 COTL1Q14019 142 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 WNT9BO14905 357 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 C8orf88P0DMB2 117 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 APOBEC3AP31941 199 aaPredicted RBP13.56□□□□□ -0.24
USP42-201ENST00000306177 ZNRF1Q8ND25 227 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 OR10J6PQ8NGY7 276 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 RTTNQ86VV8 2226 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 RLFQ13129 1914 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 KLK2P20151 261 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 ACSF3Q4G176 576 aaPredicted RBP13.56□□□□□ -0.24
USP42-201ENST00000306177 SCGB1D4Q6XE38 83 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 DNM1P46Q6ZS02 220 aa13.56□□□□□ -0.24
USP42-201ENST00000306177 A0A087X0M5 115 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 LOC102723996A0A087X1L8 192 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 A0A1B0GX30 115 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 RSPO4Q2I0M5 234 aaPredicted RBP13.55□□□□□ -0.24
USP42-201ENST00000306177 Q5BKY6 102 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 ZNF343Q6P1L6 599 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 EBLN2Q6P2I7 272 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 NEUROG3Q9Y4Z2 214 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 DANCRP0C864 163 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 NUBP1P53384 320 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 CD81P60033 236 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 OR8A1Q8NGG7 326 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 SH3BGRL3Q9H299 93 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 TWIST1Q15672 202 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 VKORC1L1Q8N0U8 176 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 HSPB7Q9UBY9 170 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 ANK1P16157 1881 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 CIDEAO60543 219 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 KIR2DL2P43627 348 aaPredicted RBP13.55□□□□□ -0.24
USP42-201ENST00000306177 ATP5IP56385 69 aaPredicted RBP13.55□□□□□ -0.24
USP42-201ENST00000306177 FAM27E3Q08E93 113 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 EAF1Q96JC9 268 aaPredicted RBP13.55□□□□□ -0.24
USP42-201ENST00000306177 C19orf24Q9BVV8 132 aa13.55□□□□□ -0.24
USP42-201ENST00000306177 NHLRC3Q5JS37 347 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 ERVH48-1M5A8F1 160 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 FCGR2BP31994 310 aaPredicted RBP13.54□□□□□ -0.24
USP42-201ENST00000306177 PNKDQ8N490 385 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 LINC01560Q8TB33 94 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.54□□□□□ -0.24
USP42-201ENST00000306177 CDK2AP1O14519 115 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 ARL14EPLP0DKL9 152 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 ATP5J2P56134 94 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 RND3P61587 244 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 DHRS11Q6UWP2 260 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 REPIN1Q9BWE0 567 aaKnown RBP13.54□□□□□ -0.24
USP42-201ENST00000306177 PDLIM4P50479 330 aa13.54□□□□□ -0.24
USP42-201ENST00000306177 C12orf77C9JDV5 145 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 TM4SF20Q53R12 229 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 TMEM56-RWDD3S4R434 201 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 ARHGEF17Q96PE2 2063 aaPredicted RBP13.53□□□□□ -0.24
USP42-201ENST00000306177 MDKP21741 143 aaPredicted RBP13.53□□□□□ -0.24
USP42-201ENST00000306177 ZNF738Q8NE65 137 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 TMEM106BQ9NUM4 274 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 ZNF318Q5VUA4 2279 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 A0A1B0GTI1 187 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 OR51G1Q8NGK1 321 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 CDC42EP3Q9UKI2 254 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 SS18L1O75177 396 aaPredicted RBP13.53□□□□□ -0.24
USP42-201ENST00000306177 IFITM2Q01629 132 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 ABLIM2Q6H8Q1 611 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 ZNF383Q8NA42 475 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 OR51M1Q9H341 326 aa13.53□□□□□ -0.24
USP42-201ENST00000306177 H0YL77 283 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 PSG9Q00887 426 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 FAM57AQ8TBR7 257 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 ZNF837Q96EG3 531 aaPredicted RBP13.52□□□□□ -0.24
USP42-201ENST00000306177 RARRES2Q99969 163 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 MRPL13Q9BYD1 178 aaKnown RBP13.52□□□□□ -0.24
USP42-201ENST00000306177 AP5S1Q9NUS5 200 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 DCAF16Q9NXF7 216 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 IGHV2OR16-5A0A0B4J2B6 119 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 REG1AP05451 166 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 TFPI2P48307 235 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 VN1R17PQ8TDU5 208 aa13.52□□□□□ -0.24
USP42-201ENST00000306177 ZCCHC14Q8WYQ9 949 aaKnown RBP13.52□□□□□ -0.24
USP42-201ENST00000306177 PSMG3Q9BT73 122 aaPredicted RBP13.52□□□□□ -0.24
USP42-201ENST00000306177 IGLV3-32A0A0A0MS00 114 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 IGFBP3P17936 291 aaPredicted RBP13.52□□□□□ -0.25
USP42-201ENST00000306177 MAS1LP35410 378 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 RPL39P5Q59GN2 51 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 SPSB4Q96A44 273 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 WDYHV1Q96HA8 205 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 C9orf172C9J069 976 aa13.52□□□□□ -0.25
USP42-201ENST00000306177 IGHV1-2P23083 117 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms