RNA–Protein interactions for RNA: ENST00000301280.9

CHAF1A-201, Transcript of chromatin assembly factor 1 subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHAF1A, Length 3,339 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHAF1A-201ENST00000301280 CTNNBIP1Q9NSA3 81 aaPredicted RBP13□□□□□ -0.33
CHAF1A-201ENST00000301280 PDLIM3Q53GG5 364 aaPredicted RBP13□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF525Q8N782 197 aa13□□□□□ -0.33
CHAF1A-201ENST00000301280 GCM1Q9NP62 436 aa13□□□□□ -0.33
CHAF1A-201ENST00000301280 A0A1W2PRD5 423 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 A0A1W2PRF3 423 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 A0A1W2PRM7 423 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 OOEPA6NGQ2 149 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 LYNX1G3V0Z9 82 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 TM4SF5O14894 197 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 IGKV1D-33P01593 117 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 IGKV1-33P01594 117 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 LYNX1P0DP58 116 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 ERVK-16P61578 105 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 Q8IYB0 196 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF383Q8NA42 475 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 ENSAO43768 121 aaKnown RBP12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 SOD3P08294 240 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 SRP19P09132 144 aaKnown RBP12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 TNFAIP6P98066 277 aaPredicted RBP12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 C11orf53Q8IXP5 236 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 TAF15Q92804 592 aaKnown RBP eCLIP12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 TCEAL7Q9BRU2 100 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 PRDM13Q9H4Q3 707 aa12.99□□□□□ -0.33
CHAF1A-201ENST00000301280 OR9G9P0C7N8 305 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 MOB3BQ86TA1 216 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 RPP25LQ8N5L8 163 aaKnown RBP12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 FRZBQ92765 325 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 CABLES2Q9BTV7 478 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 POLQO75417 2590 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 MYO18BQ8IUG5 2567 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BKO60814 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BJP06899 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BOP23527 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BBP33778 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BDP58876 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BCP62807 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST2H2BEQ16778 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ACSM6Q6P461 480 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF295-AS1Q8N0V1 137 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BHQ93079 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 S1PR3Q99500 378 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BNQ99877 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 HIST1H2BMQ99879 126 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 SETD2Q9BYW2 2564 aaPredicted RBP12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF729A6NN14 1252 aaPredicted RBP12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 CDX1P47902 265 aaPredicted RBP12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF726P1Q15940 193 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF645Q8N7E2 425 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 TVP23CQ96ET8 276 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 ABHD17AQ96GS6 310 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 LOXL4Q96JB6 756 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 SNX22Q96L94 193 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 DKK4Q9UBT3 224 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 DMRT1Q9Y5R6 373 aa12.98□□□□□ -0.33
CHAF1A-201ENST00000301280 IGKV1D-17A0A075B6S4 117 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 IQCF6A8MYZ5 107 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 ZNF134P52741 427 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 MLANAQ16655 118 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 MIC13Q5XKP0 118 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 TMEM37Q8WXS4 190 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 MRPL37Q9BZE1 423 aaKnown RBP12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 SMDT1Q9H4I9 107 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 LAMP3Q9UQV4 416 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 CSPG4Q6UVK1 2322 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 C1QTNF9BB2RNN3 333 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 J3QW42 95 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 TNFSF13O75888 250 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 GCSAMQ8N6F7 178 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 NEUROG1Q92886 237 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 USP9YO00507 2555 aaPredicted RBP12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 HCFC1P51610 2035 aa12.97□□□□□ -0.33
CHAF1A-201ENST00000301280 RNF212BA8MTL3 300 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 MMP23AO75900 390 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 FAM87AP0C7U9 286 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 CEACAM1P13688 526 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 IRF2P14316 349 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 CCL3L1P16619 93 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 FAM3BP58499 235 aaPredicted RBP12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 LFNGQ8NES3 379 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 LRFN3Q9BTN0 628 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 GPR61Q9BZJ8 451 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 PTPRBP23467 1997 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 TLN2Q9Y4G6 2542 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 LRRC30A6NM36 301 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 RRHO14718 337 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 S100A2P29034 98 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 SEM1Q6ZVN7 128 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 CLDND2Q8NHS1 167 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 RAB24Q969Q5 203 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 KIAA1456Q9P272 454 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 TP53TG5Q9Y2B4 290 aa12.96□□□□□ -0.33
CHAF1A-201ENST00000301280 SSTP61278 116 aa12.96□□□□□ -0.34
CHAF1A-201ENST00000301280 ZNF146Q15072 292 aa12.96□□□□□ -0.34
CHAF1A-201ENST00000301280 ABHD5Q8WTS1 349 aa12.96□□□□□ -0.34
CHAF1A-201ENST00000301280 PFDN5Q99471 154 aa12.96□□□□□ -0.34
CHAF1A-201ENST00000301280 ENY2Q9NPA8 101 aa12.96□□□□□ -0.34
CHAF1A-201ENST00000301280 THBS3P49746 956 aa12.95□□□□□ -0.34
CHAF1A-201ENST00000301280 GFRALQ6UXV0 394 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms