RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 RPP25LQ8N5L8 163 aaKnown RBP19.75■□□□□ 0.75
TRIM54-201ENST00000296098 NPCDR1Q9BY65 106 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 LINC00574Q9H8X3 128 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 SLC39A9Q9NUM3 307 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 ZGRF1Q86YA3 2104 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 MBP02144 154 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 RELBQ01201 579 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 RNF212Q495C1 297 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 CORO2AQ92828 525 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 TVP23CQ96ET8 276 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 APC2O95996 2303 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 RAB5BP61020 215 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 RPP30P78346 268 aaKnown RBP19.74■□□□□ 0.75
TRIM54-201ENST00000296098 PDLIM3Q53GG5 364 aaPredicted RBP19.74■□□□□ 0.75
TRIM54-201ENST00000296098 ADAM5Q6NVV9 412 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 ZFP82Q8N141 532 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 LYG1Q8N1E2 194 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 ZNF709Q8N972 641 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 LHX4Q969G2 390 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 ZNF251Q9BRH9 671 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 BIN3Q9NQY0 253 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 DOCK11Q5JSL3 2073 aa19.74■□□□□ 0.75
TRIM54-201ENST00000296098 RAB11AP62491 216 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 MRPS11P82912 194 aaKnown RBP19.73■□□□□ 0.75
TRIM54-201ENST00000296098 FFAR4Q5NUL3 377 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 ADTRPQ96IZ2 230 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 PRELID1Q9Y255 219 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 ACACAQ13085 2346 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 TMPRSS2O15393 492 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 MDKP21741 143 aaPredicted RBP19.73■□□□□ 0.75
TRIM54-201ENST00000296098 GNG10P50151 68 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 SLC35E3Q7Z769 313 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 C2CD4CQ8TF44 421 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 SLC25A22Q9H936 323 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 VAX2Q9UIW0 290 aa19.73■□□□□ 0.75
TRIM54-201ENST00000296098 TRAV3A0A0B4J244 114 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 CTXND1A0A1B0GTU2 59 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 hADV38S2A0JD32 116 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 C1orf196B1AJZ1 125 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 C17orf112F2Z3M2 114 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 NDUFA2O43678 99 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 OR2C1O95371 312 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 TAGLN2P37802 199 aaKnown RBP19.72■□□□□ 0.75
TRIM54-201ENST00000296098 DLK1P80370 383 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 RBPJQ06330 500 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 HABP2Q14520 560 aaPredicted RBP19.72■□□□□ 0.75
TRIM54-201ENST00000296098 FAM90A2PQ658T7 463 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 FAM24BQ8N5W8 94 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 P2RX4Q99571 388 aa19.72■□□□□ 0.75
TRIM54-201ENST00000296098 HEYLQ9NQ87 328 aaPredicted RBP19.72■□□□□ 0.75
TRIM54-201ENST00000296098 TRAV38-1A0A0B4J264 116 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 IFNA10P01566 189 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 NDUFB7P17568 137 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 VDAC2P45880 294 aaPredicted RBP19.71■□□□□ 0.75
TRIM54-201ENST00000296098 TLE1Q04724 770 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 PMS2P11Q13670 270 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 ZCCHC24Q8N2G6 241 aaKnown RBP19.71■□□□□ 0.75
TRIM54-201ENST00000296098 OR10G9Q8NGN4 311 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 OR10G7Q8NGN6 311 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 CA5BP1Q8WTZ4 195 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 SAP30LQ9HAJ7 183 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 RPUSD1Q9UJJ7 312 aaKnown RBP19.71■□□□□ 0.75
TRIM54-201ENST00000296098 LINC00312Q9Y6C7 94 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 A0A087WWC5 75 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 EIF3GO75821 320 aaKnown RBP eCLIP19.71■□□□□ 0.75
TRIM54-201ENST00000296098 RAB5AP20339 215 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 ZNF383Q8NA42 475 aa19.71■□□□□ 0.75
TRIM54-201ENST00000296098 KLF2Q9Y5W3 355 aaPredicted RBP19.71■□□□□ 0.75
TRIM54-201ENST00000296098 ICE1Q9Y2F5 2266 aa19.7■□□□□ 0.74
TRIM54-201ENST00000296098 C15orf61A6NNL5 157 aa19.7■□□□□ 0.74
TRIM54-201ENST00000296098 MMP23AO75900 390 aa19.7■□□□□ 0.74
TRIM54-201ENST00000296098 RND1Q92730 232 aa19.7■□□□□ 0.74
TRIM54-201ENST00000296098 SLC25A10Q9UBX3 287 aaPredicted RBP19.7■□□□□ 0.74
TRIM54-201ENST00000296098 TCF19Q9Y242 345 aa19.7■□□□□ 0.74
TRIM54-201ENST00000296098 TRGV8A0A0C4DH27 118 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 hCG_1809904A0A1W2PP81 198 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 A0A1W2PR64 198 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 A0A1W2PRV1 198 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 CD1BP29016 333 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 HOXA1P49639 335 aaPredicted RBP19.69■□□□□ 0.74
TRIM54-201ENST00000296098 RBMS3Q6XE24 437 aaKnown RBP19.69■□□□□ 0.74
TRIM54-201ENST00000296098 C1orf87Q8N0U7 546 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 RHOVQ96L33 236 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 ACTR3CQ9C0K3 210 aaPredicted RBP19.69■□□□□ 0.74
TRIM54-201ENST00000296098 WDR83OSQ9Y284 106 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 FAM87AP0C7U9 286 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 OR4A47Q6IF82 309 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 SLC25A48Q6ZT89 311 aaKnown RBP19.69■□□□□ 0.74
TRIM54-201ENST00000296098 WFIKKN1Q96NZ8 548 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 NGBQ9NPG2 151 aa19.69■□□□□ 0.74
TRIM54-201ENST00000296098 VSTM5A8MXK1 200 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 GFRA3O60609 400 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 MAS1LP35410 378 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 YPEL4Q96NS1 127 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 GAL3ST2Q9H3Q3 398 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 BSNQ9UPA5 3926 aa19.68■□□□□ 0.74
TRIM54-201ENST00000296098 ATXN7O15265 892 aaPredicted RBP19.68■□□□□ 0.74
TRIM54-201ENST00000296098 MEF2CQ06413 473 aaPredicted RBP19.68■□□□□ 0.74
TRIM54-201ENST00000296098 FOXA2Q9Y261 457 aaPredicted RBP19.68■□□□□ 0.74
TRIM54-201ENST00000296098 TET2Q6N021 2002 aaPredicted RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms