RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RAB29O14966 203 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 HPRT1P00492 218 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 IGKV1-16P04430 117 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 IFNA4P05014 189 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 FGF7P21781 194 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 TNCP24821 2201 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 F2RL2O00254 374 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 DVL1O14640 695 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 NDUFB3O43676 98 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 UCNP55089 124 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 TLE4Q04727 773 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 TFF3Q07654 80 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 DMRTC2Q8IXT2 367 aaPredicted RBP9.45□□□□□ -0.9
CUX1-202ENST00000292538 ISOC2Q96AB3 205 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 CLCC1Q96S66 551 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 ACACBO00763 2458 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 RBFOX3A6NFN3 312 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 TRIM77I1YAP6 450 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 NCMAPQ5T1S8 102 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 TMEM200BQ69YZ2 307 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 MUC15Q8N387 334 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 ZNF383Q8NA42 475 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 FAM222BQ8WU58 562 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 SLC25A22Q9H936 323 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 ITPR1Q14643 2758 aa9.45□□□□□ -0.9
CUX1-202ENST00000292538 PKD1L2Q7Z442 2459 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 IGHV3-72A0A0B4J1Y9 119 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 IGHV1-69-2A0A0G2JMI3 117 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 SOX15O60248 233 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 NQO2P16083 231 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 CA7P43166 264 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 RAB2AP61019 212 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 HFEQ30201 348 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 LRRC10Q5BKY1 277 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 OR10X1Q8NGY0 326 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 MS4A5Q9H3V2 200 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 LAMP3Q9UQV4 416 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 APOBEC3AP31941 199 aaPredicted RBP9.44□□□□□ -0.9
CUX1-202ENST00000292538 RAB7AP51149 207 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 DIAPH2-AS1Q14236 149 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 SOHLH1Q5JUK2 328 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 SSX7Q7RTT5 188 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 ZNF709Q8N972 641 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 CLRN3Q8NCR9 226 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 TAF15Q92804 592 aaKnown RBP eCLIP9.44□□□□□ -0.9
CUX1-202ENST00000292538 ZNF714Q96N38 554 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 WDR61Q9GZS3 305 aaKnown RBP9.44□□□□□ -0.9
CUX1-202ENST00000292538 HIVEP3Q5T1R4 2406 aa9.44□□□□□ -0.9
CUX1-202ENST00000292538 CACNA1BQ00975 2339 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 RRHO14718 337 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 OR8U8P0C7N1 319 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 COL8A2P25067 703 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 CHRNB4P30926 498 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 LRRC75BQ2VPJ9 315 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 ZNF787Q6DD87 383 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 SPSB3Q6PJ21 355 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 ZFP82Q8N141 532 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 OR4S2Q8NH73 311 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 HIPK2Q9H2X6 1198 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 SPG11Q96JI7 2443 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 ABCA1O95477 2261 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 FCN3O75636 299 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 AWAT1Q58HT5 328 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 SLC35B3Q9H1N7 401 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 TMPRSS5Q9H3S3 457 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 SLC39A9Q9NUM3 307 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 CTSZQ9UBR2 303 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 CARHSP1Q9Y2V2 147 aaKnown RBP9.43□□□□□ -0.9
CUX1-202ENST00000292538 CACNA1AO00555 2505 aa9.43□□□□□ -0.9
CUX1-202ENST00000292538 ZNF729A6NN14 1252 aaPredicted RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 ENSAO43768 121 aaKnown RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 ARG1P05089 322 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 CGB3P0DN86 165 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 CGB7P0DN87 165 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 OR4A47Q6IF82 309 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 TMEM14EPQ6UXP3 125 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 LYPD6BQ8NI32 183 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 DIRC2Q96SL1 478 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 SLC35D1Q9NTN3 355 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 COA4Q9NYJ1 87 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 ZFYVE26Q68DK2 2539 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 FAM90A26D6RGX4 464 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 SIAH2O43255 324 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 RAB11AP62491 216 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 GCSAMLQ5JQS6 135 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 FFAR4Q5NUL3 377 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 TEX36Q5VZQ5 186 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 FAM122CQ6P4D5 195 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 CYB561D1Q8N8Q1 229 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 FAM122AQ96E09 287 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 MRPL20Q9BYC9 149 aaKnown RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 GAL3ST2Q9H3Q3 398 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 RAB9BQ9NP90 201 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 ENY2Q9NPA8 101 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 RPUSD1Q9UJJ7 312 aaKnown RBP9.42□□□□□ -0.9
CUX1-202ENST00000292538 LOC105371267A0A1B0GV96 52 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 DLL1O00548 723 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 P0C879 139 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 APELAP0DMC3 54 aa9.42□□□□□ -0.9
CUX1-202ENST00000292538 ADORA2A-AS1P86434 159 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms