RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 FAM90A16PA6NEW6 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A20PA6NIJ5 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A8PA6NJQ4 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A7PA6NKC0 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A22PA8MWA6 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A12PA8MX19 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A5PA8MXJ8 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A23PA8MXZ1 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A15PP0C7V4 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A13PP0C7W8 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A14PP0C7W9 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 FAM90A24PP0C7X0 464 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 NSUN5P2Q63ZY6 315 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 CALYQ9NYX4 217 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 ODAMA1E959 279 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 IL4P05112 153 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 DNM1P46Q6ZS02 220 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 CLDND2Q8NHS1 167 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 CISD1Q9NZ45 108 aaKnown RBP8.06□□□□□ -1.12
CUX1-201ENST00000292535 PDLIM4P50479 330 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 TMEM101Q96IK0 257 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 SAXO1Q8IYX7 474 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 DNAJC4Q9NNZ3 241 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 THY1P04216 161 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 LILRA6Q6PI73 481 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 NUDT10Q8NFP7 164 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 SDF2L1Q9HCN8 221 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 OR4C45A6NMZ5 311 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 ATXN7O15265 892 aaPredicted RBP8.06□□□□□ -1.12
CUX1-201ENST00000292535 SLC25A20O43772 301 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 RND2P52198 227 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 TFF2Q03403 129 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 SLC6A13Q9NSD5 602 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 OR10AG1Q8NH19 301 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 AURKAIP1Q9NWT8 199 aaPredicted RBP8.06□□□□□ -1.12
CUX1-201ENST00000292535 C7orf77A4D0Y5 90 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 PAX1P15863 534 aa8.06□□□□□ -1.12
CUX1-201ENST00000292535 ADAD2Q8NCV1 583 aaKnown RBP8.06□□□□□ -1.12
CUX1-201ENST00000292535 FLG2Q5D862 2391 aaPredicted RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 IGKV3OR2-268A0A0C4DH90 116 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 TMEM229AB2RXF0 380 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 SLC25A17O43808 307 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 LIPFP07098 398 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 MBNL2Q5VZF2 373 aaKnown RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 CITED2Q99967 270 aaPredicted RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 SPAARA0A1B0GVQ0 90 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 PSMB11A5LHX3 300 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 ARL14EPLP0DKL9 152 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 FOLR2P14207 255 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 RPP25Q9BUL9 199 aaKnown RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 TCF21O43680 179 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 TNFRSF9Q07011 255 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 PKIBQ9C010 78 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 COL9A1P20849 921 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 A0A1W2PPE3 182 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 PGLYRP1O75594 196 aaPredicted RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 ADAP1O75689 374 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 OR8G5Q8NG78 346 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 ZNF414Q96IQ9 312 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 TMEM222Q9H0R3 208 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 ST6GALNAC2Q9UJ37 374 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 TNRC6CQ9HCJ0 1690 aaKnown RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 ABCA12Q86UK0 2595 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 FCGR2BP31994 310 aaPredicted RBP8.05□□□□□ -1.12
CUX1-201ENST00000292535 OR51G1Q8NGK1 321 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 TMEM186Q96B77 213 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 ELOVL5Q9NYP7 299 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 IDI2-AS1Q9NZ38 188 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 FLRT3Q9NZU0 649 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 DCAF12L2Q5VW00 463 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 SLC16A13Q7RTY0 426 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 C10orf111Q8N326 155 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 ITLN1Q8WWA0 313 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 NUDT11Q96G61 164 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 LNP1A1A4G5 178 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 B9A039 149 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 COX5BP10606 129 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 HSPB9Q9BQS6 159 aa8.05□□□□□ -1.12
CUX1-201ENST00000292535 MARCH11A6NNE9 402 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 NDUFB4O95168 129 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 JPT1Q9UK76 154 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 HIST1H1AQ02539 215 aaPredicted RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 JMJD8Q96S16 334 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 FCARP24071 287 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 AMER3Q8N944 861 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 SPSB4Q96A44 273 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 HYAL3O43820 417 aaPredicted RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 ZP4Q12836 540 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 ARID2Q68CP9 1835 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 WNK3Q9BYP7 1800 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 IGHV3-72A0A0B4J1Y9 119 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 SRSF5Q13243 272 aaKnown RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 A0A1B0GV72 72 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 SAPCD1Q5SSQ6 148 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 VCX2Q9H322 139 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 IGHV3-21A0A0B4J1V1 117 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 PRR19A6NJB7 356 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 SPINT1O43278 529 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 TRAF4Q9BUZ4 470 aaPredicted RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 OR5AC2Q9NZP5 309 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms