RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 TMEM56Q96MV1 263 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 PLSCR2Q9NRY7 297 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 TMEM56-RWDD3S4R434 201 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 ADAMTS9Q9P2N4 1935 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 ENSAO43768 121 aaKnown RBP9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 CCL1P22362 96 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 HINT1P49773 126 aaPredicted RBP9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 LGALS4P56470 323 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 RPL23P62829 140 aaKnown RBP9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 TNFRSF9Q07011 255 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 LRRC75BQ2VPJ9 315 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 Q56UQ5 140 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 TIMD4Q96H15 378 aa9.81□□□□□ -0.84
CLSTN3-201ENST00000266546 PCNX2A6NKB5 2137 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 TRAV38-1A0A0B4J264 116 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 P2RY6Q15077 328 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 ATP1A1-AS1Q5TC04 95 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 TMEM170AQ8WVE7 144 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 SPRY4Q9C004 299 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 TMEM242Q9NWH2 141 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 RFNGQ9Y644 331 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 SYNGR1O43759 233 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 IGHV3-13P01766 116 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 IGHV3-7P01780 117 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 ZNF718Q3SXZ3 478 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 KRTCAP3Q53RY4 240 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 FBXW9Q5XUX1 488 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 OR8I2Q8N0Y5 310 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 H1FXQ92522 213 aaKnown RBP9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 EGLN1Q9GZT9 426 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 DEPPQ9NTK1 212 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 TECRQ9NZ01 308 aaKnown RBP9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 OR6C3Q9NZP0 311 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 A0A0G2JMM0 328 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 A0A1W2PPB8 328 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 A0A1W2PRS3 328 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 KIR3DP1A8MWS1 328 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 PROB1E7EW31 1015 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 DTX1Q86Y01 620 aa9.8□□□□□ -0.84
CLSTN3-201ENST00000266546 OOEPA6NGQ2 149 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 CEACAM18A8MTB9 384 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 CCL21O00585 134 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 LYZL6O75951 148 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 CBLN1P23435 193 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 RAB7AP51149 207 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 ID3Q02535 119 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 TCF15Q12870 199 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 C2orf88Q9BSF0 95 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 ZNF835Q9Y2P0 537 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 M0R1B8 84 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 DKK1O94907 266 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 NUTF2P61970 127 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 SFRP2Q96HF1 295 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 QTRT1Q9BXR0 403 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 PXMP4Q9Y6I8 212 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 ZNF462Q96JM2 2506 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 K7EQM0 130 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 HAND1O96004 215 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 APCSP02743 223 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 COX5BP10606 129 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 UBE2L3P68036 154 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 WDFY1Q8IWB7 410 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 RBM14Q96PK6 669 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 TMEM191AQ9H0A3 160 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 DLL3Q9NYJ7 618 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 OR1A1Q9P1Q5 309 aa9.79□□□□□ -0.84
CLSTN3-201ENST00000266546 MPDU1O75352 247 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 SCGB2A1O75556 95 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 CALHM1Q8IU99 346 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 ZNF525Q8N782 197 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 WDYHV1Q96HA8 205 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 LYZL4Q96KX0 146 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 GSX1Q9H4S2 264 aaPredicted RBP9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 TRAT1Q6PIZ9 186 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 TEPPQ6URK8 271 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 MDS2Q8NDY4 140 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 ZNF407Q9C0G0 2248 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 ZG16O60844 167 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 LHX2P50458 406 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 KIAA1644Q3SXP7 199 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 LEMD1Q68G75 181 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 GTF2H5Q6ZYL4 71 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 BEND2Q8NDZ0 799 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 IL19Q9UHD0 177 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 WASHC3Q9Y3C0 194 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 LYG1Q8N1E2 194 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 RND1Q92730 232 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 RNF24Q9Y225 148 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 TIMM9Q9Y5J7 89 aa9.78□□□□□ -0.84
CLSTN3-201ENST00000266546 FASNP49327 2511 aaKnown RBP9.77□□□□□ -0.84
CLSTN3-201ENST00000266546 LOC102724200A0A096LPH7 203 aaPredicted RBP9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 CT45A10P0DMU9 189 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 MFAP2P55001 183 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 S100A7AQ86SG5 101 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 WNT5BQ9H1J7 359 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 NPVFQ9HCQ7 196 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 DNAJC4Q9NNZ3 241 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 IGKV3D-15A0A087WSY6 115 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 A1L4Q6 167 aa9.77□□□□□ -0.85
CLSTN3-201ENST00000266546 NPY1RP25929 384 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms