RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 MEF2BQ02080 365 aaPredicted RBP13.07□□□□□ -0.32
TIMP3-201ENST00000266085 WDR31Q8NA23 367 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 A1L4Q6 167 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 CLPSP04118 112 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 AMTP48728 403 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 RND2P52198 227 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 PQLC2Q6ZP29 291 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 C16orf82Q7Z2V1 217 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 LDLRAD3Q86YD5 345 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 C11orf42Q8N5U0 333 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 SHANK1Q9Y566 2161 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 KIAA2026Q5HYC2 2103 aa13.07□□□□□ -0.32
TIMP3-201ENST00000266085 LOC105371242A0A075B767 164 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 J3QRE1 110 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 ORM1P02763 201 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 COMPP49747 757 aaPredicted RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 GGNQ86UU5 652 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 OR10S1Q8NGN2 331 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 P2RX4Q99571 388 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 SOSTQ9BQB4 213 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 TXNDC17Q9BRA2 123 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 PTPRQQ9UMZ3 2332 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 H0YL77 283 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 HIST1H1EP10412 219 aaKnown RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 DNM1P46Q6ZS02 220 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 FAM216BQ8N7L0 139 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 GALNT14Q96FL9 552 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 QTRT1Q9BXR0 403 aaKnown RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 RABAC1Q9UI14 185 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 SNRPCP09234 159 aaKnown RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 PMS2P11Q13670 270 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 LY6DQ14210 128 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 ZNF385CQ66K41 422 aaPredicted RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 AP4M1O00189 453 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 RPL30P62888 115 aaKnown RBP13.06□□□□□ -0.32
TIMP3-201ENST00000266085 FGFBP3Q8TAT2 258 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 TMEM204Q9BSN7 226 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 VAMP8Q9BV40 100 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 FBLN5Q9UBX5 448 aa13.06□□□□□ -0.32
TIMP3-201ENST00000266085 IQCF6A8MYZ5 107 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 CD8AP01732 235 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 MIC13Q5XKP0 118 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 MRPL54Q6P161 138 aaKnown RBP13.05□□□□□ -0.32
TIMP3-201ENST00000266085 IGKV1-9A0A0C4DH69 117 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 SRSF6Q13247 344 aaKnown RBP13.05□□□□□ -0.32
TIMP3-201ENST00000266085 ZNF430Q9H8G1 570 aaPredicted RBP13.05□□□□□ -0.32
TIMP3-201ENST00000266085 IL36RNQ9UBH0 155 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 FOXF2Q12947 444 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 VKORC1L1Q8N0U8 176 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 SMIM8Q96KF7 97 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 TP53BP1Q12888 1972 aaPredicted RBP13.05□□□□□ -0.32
TIMP3-201ENST00000266085 IGKV3D-15A0A087WSY6 115 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 PNKDQ8N490 385 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 PIMREGQ9BSJ6 248 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 TLNRD1Q9H1K6 362 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 PITPNC1Q9UKF7 332 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 UFC1Q9Y3C8 167 aa13.05□□□□□ -0.32
TIMP3-201ENST00000266085 PAFAH1B2P68402 229 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 UNQ5815/PRO19632Q6UWF5 114 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 PQLC2LA1A4F0 135 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 F12P00748 615 aaPredicted RBP13.04□□□□□ -0.32
TIMP3-201ENST00000266085 PF4V1P10720 104 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 CCL1P22362 96 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 LOXL3P58215 753 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 OR5AU1Q8NGC0 362 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 RAB24Q969Q5 203 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 UCP1P25874 307 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 GAS1P54826 345 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 RIGQ13278 110 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 DCTN5Q9BTE1 182 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 RSRP1Q9BUV0 290 aa13.04□□□□□ -0.32
TIMP3-201ENST00000266085 PIEZO1Q92508 2521 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 TRBV23-1A0A0A0MS06 115 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 C17orf100A8MU93 164 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 PLAUP00749 431 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 CSN3P07498 182 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 ZCCHC24Q8N2G6 241 aaKnown RBP13.03□□□□□ -0.32
TIMP3-201ENST00000266085 SNRNP40Q96DI7 357 aaKnown RBP13.03□□□□□ -0.32
TIMP3-201ENST00000266085 PDLIM4P50479 330 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 C1QTNF12Q5T7M4 302 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 SGMS2Q8NHU3 365 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 NDUFB4O95168 129 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 HSPB1P04792 205 aaKnown RBP13.03□□□□□ -0.32
TIMP3-201ENST00000266085 RNASE6Q93091 150 aaKnown RBP13.03□□□□□ -0.32
TIMP3-201ENST00000266085 NLRC5Q86WI3 1866 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 OR2T8A6NH00 312 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 J3KRW8 73 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 RPL39P5Q59GN2 51 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 OR13A1Q8NGR1 328 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 LYZL4Q96KX0 146 aa13.03□□□□□ -0.32
TIMP3-201ENST00000266085 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.02□□□□□ -0.32
TIMP3-201ENST00000266085 FOXH1O75593 365 aa13.02□□□□□ -0.32
TIMP3-201ENST00000266085 OR5AL1P0C617 328 aa13.02□□□□□ -0.32
TIMP3-201ENST00000266085 LRRC75BQ2VPJ9 315 aa13.02□□□□□ -0.32
TIMP3-201ENST00000266085 PCSK4Q6UW60 755 aa13.02□□□□□ -0.32
TIMP3-201ENST00000266085 BPIFA4PQ86YQ2 179 aa13.02□□□□□ -0.32
TIMP3-201ENST00000266085 NHLH1Q02575 133 aa13.02□□□□□ -0.33
TIMP3-201ENST00000266085 RBM14Q96PK6 669 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms