RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 KCNK15Q9H427 330 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 CHCHD2Q9Y6H1 151 aaPredicted RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 A0A0G2JMZ2 1700 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 LRRC37A2A6NM11 1700 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 P01737 135 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 BCL2P10415 239 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 TSPOP30536 169 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 KIR2DL2P43627 348 aaPredicted RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 TMEM50BP56557 158 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 LRRC75BQ2VPJ9 315 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 SLC35E4Q6ICL7 350 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 OR10J6PQ8NGY7 276 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 RAB37Q96AX2 223 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 SNRNP40Q96DI7 357 aaKnown RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 VSIG4Q9Y279 399 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 PSG9Q00887 426 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 MEF2CQ06413 473 aaPredicted RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 C5orf17Q8NAS9 161 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 TUBGCP6Q96RT7 1819 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 BRCA1P38398 1863 aaKnown RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 ZFP36L1Q07352 338 aaKnown RBP10.94□□□□□ -0.66
USP40-201ENST00000251722 PYY3Q5JQD4 70 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 RABAC1Q9UI14 185 aa10.94□□□□□ -0.66
USP40-201ENST00000251722 IL18BPO95998 194 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 PPP1CCP36873 323 aaKnown RBP10.93□□□□□ -0.66
USP40-201ENST00000251722 IER3P46695 156 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 LCN2P80188 198 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 ANKRD39Q53RE8 183 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 DCAF12L2Q5VW00 463 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 LHFPL4Q7Z7J7 247 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 SRXN1Q9BYN0 137 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 GEMIN7Q9H840 131 aaKnown RBP10.93□□□□□ -0.66
USP40-201ENST00000251722 MIA3Q5JRA6 1907 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 HLA-DRB1P01911 266 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 OR10AG1Q8NH19 301 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 KLF2Q9Y5W3 355 aaPredicted RBP10.93□□□□□ -0.66
USP40-201ENST00000251722 COLCA2A8K830 154 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 E9PLN8 166 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 TSPAN13O95857 204 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 FUT5Q11128 374 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 RAX2Q96IS3 184 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 VKORC1Q9BQB6 163 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 TRBV5-7A0A0A0MS05 114 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 ATP5G2Q06055 141 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 EEF1AKMT3Q96AZ1 226 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 A8MWP6 167 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 HLA-DQA1P01909 254 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 PSG5Q15238 335 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 OR4C13Q8NGP0 309 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 MRGPRFQ96AM1 343 aa10.93□□□□□ -0.66
USP40-201ENST00000251722 TRAV8-7A0A075B6U6 113 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 RPS20P60866 119 aaKnown RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 SRSF4Q08170 494 aaKnown RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 CRIPAKQ8N1N5 446 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 APCDD1LQ8NCL9 501 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 ZNF418Q8TF45 676 aaPredicted RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 HIST1H2BLQ99880 126 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 LHFPL6Q9Y693 200 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 MYO7AQ13402 2215 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 UNQ9370/PRO34162Q6UXP9 181 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 MRPL30Q8TCC3 161 aaKnown RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 ABHD17AQ96GS6 310 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 G6PC2Q9NQR9 355 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 IGLV3-32A0A0A0MS00 114 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 NTN3O00634 580 aaPredicted RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 GCM2O75603 506 aaPredicted RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 CD40P25942 277 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 UNQ5815/PRO19632Q6UWF5 114 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 SH3BGRL3Q9H299 93 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 C9orf172C9J069 976 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 OR2J3O76001 311 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 PF4V1P10720 104 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 EWSR1Q01844 656 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP40-201ENST00000251722 OR52M1Q8NGK5 317 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 LSM10Q969L4 123 aaKnown RBP10.92□□□□□ -0.66
USP40-201ENST00000251722 RARRES2Q99969 163 aa10.92□□□□□ -0.66
USP40-201ENST00000251722 UMODP07911 640 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 PSG2P11465 335 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 UCP3P55916 312 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 SGMS2Q8NHU3 365 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 CST9LQ9H4G1 147 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 NUP37Q8NFH4 326 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 ZNF257Q9Y2Q1 563 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 URB1O60287 2271 aaKnown RBP10.91□□□□□ -0.66
USP40-201ENST00000251722 CENPVL1A0A0U1RR11 272 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 ZNF735P0CB33 412 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 SEC11AP67812 179 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 GAGE2BQ13066 116 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 ACSF3Q4G176 576 aaPredicted RBP10.91□□□□□ -0.66
USP40-201ENST00000251722 GAGE2EQ4V326 116 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 TMEM78Q5T7P6 136 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 ABHD12Q8N2K0 398 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 FBLIM1Q8WUP2 373 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 OR5P3Q8WZ94 311 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 GAGE2DQ9UEU5 116 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 C11orf94C9JXX5 98 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 MDKP21741 143 aaPredicted RBP10.91□□□□□ -0.66
USP40-201ENST00000251722 CSRP3P50461 194 aa10.91□□□□□ -0.66
USP40-201ENST00000251722 FAM222BQ8WU58 562 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms