RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 OTUD5Q96G74 571 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 FAM205AQ6ZU69 1335 aa18.99■□□□□ 0.63
SYNE2-228ENST00000639659 CENPFP49454 3210 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 FRAT2O75474 233 aaPredicted RBP18.98■□□□□ 0.63
SYNE2-228ENST00000639659 CRKP46108 304 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 TNNI2P48788 182 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 TDRD7Q8NHU6 1098 aaKnown RBP18.98■□□□□ 0.63
SYNE2-228ENST00000639659 TMEM106CQ9BVX2 250 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 PUS3Q9BZE2 481 aaKnown RBP18.98■□□□□ 0.63
SYNE2-228ENST00000639659 SERPINA10Q9UK55 444 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 CSADQ9Y600 493 aa18.98■□□□□ 0.63
SYNE2-228ENST00000639659 RBBP6Q7Z6E9 1792 aaKnown RBP18.97■□□□□ 0.63
SYNE2-228ENST00000639659 CACNB3P54284 484 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 CAP1Q01518 475 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 VGLL4Q14135 290 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 UBE4AQ14139 1066 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 HABP4Q5JVS0 413 aaKnown RBP18.97■□□□□ 0.63
SYNE2-228ENST00000639659 BRI3BPQ8WY22 251 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 SUCLG2Q96I99 432 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 ZFYVE28Q9HCC9 887 aa18.97■□□□□ 0.63
SYNE2-228ENST00000639659 KIAA0100Q14667 2235 aaKnown RBP18.97■□□□□ 0.63
SYNE2-228ENST00000639659 MKI67P46013 3256 aaKnown RBP18.97■□□□□ 0.63
SYNE2-228ENST00000639659 SLC9C1Q4G0N8 1177 aa18.96■□□□□ 0.63
SYNE2-228ENST00000639659 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.96■□□□□ 0.63
SYNE2-228ENST00000639659 ARMC5Q96C12 935 aa18.96■□□□□ 0.63
SYNE2-228ENST00000639659 FAM84BQ96KN1 310 aaPredicted RBP18.96■□□□□ 0.63
SYNE2-228ENST00000639659 PTCH2Q9Y6C5 1203 aa18.96■□□□□ 0.63
SYNE2-228ENST00000639659 TESPA1A2RU30 521 aaPredicted RBP18.95■□□□□ 0.62
SYNE2-228ENST00000639659 GTF2A2P52657 109 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 MAP3K9P80192 1104 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 GRIK5Q16478 980 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 SLC4A8Q2Y0W8 1093 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 WDR63Q8IWG1 891 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 MS4A4AQ96JQ5 239 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 TEPSINQ96N21 525 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 SRCIN1Q9C0H9 1055 aa18.95■□□□□ 0.62
SYNE2-228ENST00000639659 ARHGEF6Q15052 776 aa18.94■□□□□ 0.62
SYNE2-228ENST00000639659 FAM43AQ8N2R8 423 aa18.94■□□□□ 0.62
SYNE2-228ENST00000639659 ZSWIM8A7E2V4 1837 aa18.93■□□□□ 0.62
SYNE2-228ENST00000639659 WDHD1O75717 1129 aaPredicted RBP18.93■□□□□ 0.62
SYNE2-228ENST00000639659 ALDH1L1O75891 902 aa18.93■□□□□ 0.62
SYNE2-228ENST00000639659 METTL24Q5JXM2 366 aa18.93■□□□□ 0.62
SYNE2-228ENST00000639659 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.93■□□□□ 0.62
SYNE2-228ENST00000639659 SPINK5Q9NQ38 1064 aaPredicted RBP18.93■□□□□ 0.62
SYNE2-228ENST00000639659 TMOD2Q9NZR1 351 aa18.93■□□□□ 0.62
SYNE2-228ENST00000639659 CAVIN4Q5BKX8 364 aa18.92■□□□□ 0.62
SYNE2-228ENST00000639659 NBPF11Q86T75 865 aa18.92■□□□□ 0.62
SYNE2-228ENST00000639659 ZNF333Q96JL9 665 aa18.92■□□□□ 0.62
SYNE2-228ENST00000639659 WRNIP1Q96S55 665 aa18.92■□□□□ 0.62
SYNE2-228ENST00000639659 MROH5Q6ZUA9 1318 aa18.92■□□□□ 0.62
SYNE2-228ENST00000639659 KIF22Q14807 665 aa18.91■□□□□ 0.62
SYNE2-228ENST00000639659 LRRC24Q50LG9 513 aa18.91■□□□□ 0.62
SYNE2-228ENST00000639659 SH3TC2Q8TF17 1288 aa18.91■□□□□ 0.62
SYNE2-228ENST00000639659 TEKT1Q969V4 418 aa18.91■□□□□ 0.62
SYNE2-228ENST00000639659 BICC1Q9H694 974 aaKnown RBP18.91■□□□□ 0.62
SYNE2-228ENST00000639659 NBPF7P0C2Y1 421 aaPredicted RBP18.9■□□□□ 0.62
SYNE2-228ENST00000639659 ZKSCAN4Q969J2 545 aaPredicted RBP18.9■□□□□ 0.62
SYNE2-228ENST00000639659 ARHGAP39Q9C0H5 1083 aa18.9■□□□□ 0.62
SYNE2-228ENST00000639659 SNCAIPQ9Y6H5 919 aa18.9■□□□□ 0.62
SYNE2-228ENST00000639659 SPDYE5A6NIY4 337 aa18.89■□□□□ 0.61
SYNE2-228ENST00000639659 CETPP11597 493 aa18.89■□□□□ 0.61
SYNE2-228ENST00000639659 TBC1D22AQ8WUA7 517 aa18.89■□□□□ 0.61
SYNE2-228ENST00000639659 KAZALD1Q96I82 304 aa18.89■□□□□ 0.61
SYNE2-228ENST00000639659 RIPOR2Q9Y4F9 1068 aa18.89■□□□□ 0.61
SYNE2-228ENST00000639659 BTBD19C9JJ37 291 aa18.88■□□□□ 0.61
SYNE2-228ENST00000639659 BCAMP50895 628 aa18.88■□□□□ 0.61
SYNE2-228ENST00000639659 NCBP3Q53F19 620 aaKnown RBP18.88■□□□□ 0.61
SYNE2-228ENST00000639659 FBXO33Q7Z6M2 555 aa18.88■□□□□ 0.61
SYNE2-228ENST00000639659 ERO1BQ86YB8 467 aa18.88■□□□□ 0.61
SYNE2-228ENST00000639659 KLHDC4Q8TBB5 520 aa18.88■□□□□ 0.61
SYNE2-228ENST00000639659 BRCA2P51587 3418 aa18.87■□□□□ 0.61
SYNE2-228ENST00000639659 IRF6O14896 467 aa18.87■□□□□ 0.61
SYNE2-228ENST00000639659 ANP32CO43423 234 aa18.87■□□□□ 0.61
SYNE2-228ENST00000639659 SNAPC2Q13487 334 aa18.87■□□□□ 0.61
SYNE2-228ENST00000639659 MIGA2Q7L4E1 593 aa18.87■□□□□ 0.61
SYNE2-228ENST00000639659 TLR2O60603 784 aa18.86■□□□□ 0.61
SYNE2-228ENST00000639659 ZEB1P37275 1124 aaPredicted RBP18.86■□□□□ 0.61
SYNE2-228ENST00000639659 LACTBP83111 547 aaPredicted RBP18.86■□□□□ 0.61
SYNE2-228ENST00000639659 FAM9BQ8IZU0 186 aa18.86■□□□□ 0.61
SYNE2-228ENST00000639659 AK9Q5TCS8 1911 aa18.86■□□□□ 0.61
SYNE2-228ENST00000639659 MYH13Q9UKX3 1938 aa18.86■□□□□ 0.61
SYNE2-228ENST00000639659 MAST3O60307 1309 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 HDLBPQ00341 1268 aaKnown RBP18.85■□□□□ 0.61
SYNE2-228ENST00000639659 DCAF15Q66K64 600 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 ANKRD44Q8N8A2 993 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.85■□□□□ 0.61
SYNE2-228ENST00000639659 HOOK2Q96ED9 719 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 ZDHHC15Q96MV8 337 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 CPA4Q9UI42 421 aa18.85■□□□□ 0.61
SYNE2-228ENST00000639659 PDE8BO95263 885 aa18.84■□□□□ 0.61
SYNE2-228ENST00000639659 IFIT1P09914 478 aaKnown RBP18.84■□□□□ 0.61
SYNE2-228ENST00000639659 INPP5BP32019 993 aa18.84■□□□□ 0.61
SYNE2-228ENST00000639659 TCP10Q12799 353 aa18.84■□□□□ 0.61
SYNE2-228ENST00000639659 PPIL2Q13356 520 aa18.84■□□□□ 0.61
SYNE2-228ENST00000639659 ZNF341Q9BYN7 854 aa18.84■□□□□ 0.61
SYNE2-228ENST00000639659 COLQQ9Y215 455 aaPredicted RBP18.84■□□□□ 0.61
SYNE2-228ENST00000639659 FXR1P51114 621 aaKnown RBP eCLIP18.83■□□□□ 0.6
SYNE2-228ENST00000639659 APOBEC3HQ6NTF7 200 aaKnown RBP18.83■□□□□ 0.6
SYNE2-228ENST00000639659 FAM83AQ86UY5 434 aa18.83■□□□□ 0.6
SYNE2-228ENST00000639659 VGLL2Q8N8G2 317 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms