RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SRCIN1Q9C0H9 1055 aa24.53■■□□□ 1.52
CLN3-262ENST00000637699 CNKSR2Q8WXI2 1034 aa24.52■■□□□ 1.52
CLN3-262ENST00000637699 TEPSINQ96N21 525 aa24.52■■□□□ 1.52
CLN3-262ENST00000637699 TMEM39BQ9GZU3 492 aa24.52■■□□□ 1.52
CLN3-262ENST00000637699 CRKP46108 304 aa24.51■■□□□ 1.51
CLN3-262ENST00000637699 CAP1Q01518 475 aa24.51■■□□□ 1.51
CLN3-262ENST00000637699 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.51■■□□□ 1.51
CLN3-262ENST00000637699 MS4A4AQ96JQ5 239 aa24.51■■□□□ 1.51
CLN3-262ENST00000637699 IQSEC3Q9UPP2 1182 aaPredicted RBP24.51■■□□□ 1.51
CLN3-262ENST00000637699 TNNI2P48788 182 aa24.5■■□□□ 1.51
CLN3-262ENST00000637699 GRIK5Q16478 980 aa24.5■■□□□ 1.51
CLN3-262ENST00000637699 KAZALD1Q96I82 304 aa24.5■■□□□ 1.51
CLN3-262ENST00000637699 RIPOR2Q9Y4F9 1068 aa24.5■■□□□ 1.51
CLN3-262ENST00000637699 OTOFQ9HC10 1997 aa24.5■■□□□ 1.51
CLN3-262ENST00000637699 KIAA0100Q14667 2235 aaKnown RBP24.49■■□□□ 1.51
CLN3-262ENST00000637699 MAP3K9P80192 1104 aa24.49■■□□□ 1.51
CLN3-262ENST00000637699 CHAF1AQ13111 956 aaPredicted RBP24.49■■□□□ 1.51
CLN3-262ENST00000637699 VGLL4Q14135 290 aa24.49■■□□□ 1.51
CLN3-262ENST00000637699 VPS37DQ86XT2 251 aa24.49■■□□□ 1.51
CLN3-262ENST00000637699 BRI3BPQ8WY22 251 aa24.49■■□□□ 1.51
CLN3-262ENST00000637699 CCL15-CCL14A0A0B4J2E2 113 aa24.48■■□□□ 1.51
CLN3-262ENST00000637699 NBPF7P0C2Y1 421 aaPredicted RBP24.48■■□□□ 1.51
CLN3-262ENST00000637699 CCL15Q16663 113 aa24.48■■□□□ 1.51
CLN3-262ENST00000637699 ARMC5Q96C12 935 aa24.48■■□□□ 1.51
CLN3-262ENST00000637699 GCC1Q96CN9 775 aa24.48■■□□□ 1.51
CLN3-262ENST00000637699 MROH5Q6ZUA9 1318 aa24.47■■□□□ 1.51
CLN3-262ENST00000637699 FRAT2O75474 233 aaPredicted RBP24.47■■□□□ 1.51
CLN3-262ENST00000637699 EN2P19622 333 aaPredicted RBP24.47■■□□□ 1.51
CLN3-262ENST00000637699 TAF1CQ15572 869 aaPredicted RBP24.47■■□□□ 1.51
CLN3-262ENST00000637699 FBXO33Q7Z6M2 555 aa24.47■■□□□ 1.51
CLN3-262ENST00000637699 CSADQ9Y600 493 aa24.47■■□□□ 1.51
CLN3-262ENST00000637699 GTF2A2P52657 109 aa24.46■■□□□ 1.51
CLN3-262ENST00000637699 CACNB3P54284 484 aa24.46■■□□□ 1.51
CLN3-262ENST00000637699 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.46■■□□□ 1.51
CLN3-262ENST00000637699 OTUD5Q96G74 571 aa24.46■■□□□ 1.51
CLN3-262ENST00000637699 BICC1Q9H694 974 aaKnown RBP24.46■■□□□ 1.51
CLN3-262ENST00000637699 ZFYVE28Q9HCC9 887 aa24.46■■□□□ 1.51
CLN3-262ENST00000637699 LRRC24Q50LG9 513 aa24.45■■□□□ 1.5
CLN3-262ENST00000637699 METTL24Q5JXM2 366 aa24.45■■□□□ 1.5
CLN3-262ENST00000637699 BRCA2P51587 3418 aa24.45■■□□□ 1.5
CLN3-262ENST00000637699 ANP32CO43423 234 aa24.44■■□□□ 1.5
CLN3-262ENST00000637699 ZEB1P37275 1124 aaPredicted RBP24.44■■□□□ 1.5
CLN3-262ENST00000637699 CAVIN4Q5BKX8 364 aa24.44■■□□□ 1.5
CLN3-262ENST00000637699 FAM43AQ8N2R8 423 aa24.44■■□□□ 1.5
CLN3-262ENST00000637699 ARAP2Q8WZ64 1704 aa24.44■■□□□ 1.5
CLN3-262ENST00000637699 HDLBPQ00341 1268 aaKnown RBP24.43■■□□□ 1.5
CLN3-262ENST00000637699 ARHGEF6Q15052 776 aa24.43■■□□□ 1.5
CLN3-262ENST00000637699 TBC1D22AQ8WUA7 517 aa24.43■■□□□ 1.5
CLN3-262ENST00000637699 TEKT1Q969V4 418 aa24.43■■□□□ 1.5
CLN3-262ENST00000637699 TMEM106CQ9BVX2 250 aa24.43■■□□□ 1.5
CLN3-262ENST00000637699 UTYO14607 1347 aa24.42■■□□□ 1.5
CLN3-262ENST00000637699 PTCH2Q9Y6C5 1203 aa24.42■■□□□ 1.5
CLN3-262ENST00000637699 SPDYE5A6NIY4 337 aa24.41■■□□□ 1.5
CLN3-262ENST00000637699 BCAMP50895 628 aa24.41■■□□□ 1.5
CLN3-262ENST00000637699 RABL6Q3YEC7 729 aaPredicted RBP24.41■■□□□ 1.5
CLN3-262ENST00000637699 SLC9C1Q4G0N8 1177 aa24.41■■□□□ 1.5
CLN3-262ENST00000637699 HABP4Q5JVS0 413 aaKnown RBP24.41■■□□□ 1.5
CLN3-262ENST00000637699 ANKRD44Q8N8A2 993 aa24.41■■□□□ 1.5
CLN3-262ENST00000637699 ZNF333Q96JL9 665 aa24.41■■□□□ 1.5
CLN3-262ENST00000637699 RBBP6Q7Z6E9 1792 aaKnown RBP24.41■■□□□ 1.5
CLN3-262ENST00000637699 PDE8BO95263 885 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 NBPF11Q86T75 865 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 FAM9BQ8IZU0 186 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 KLHDC4Q8TBB5 520 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 ZKSCAN4Q969J2 545 aaPredicted RBP24.4■■□□□ 1.5
CLN3-262ENST00000637699 WRNIP1Q96S55 665 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 TMOD2Q9NZR1 351 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 SNCAIPQ9Y6H5 919 aa24.4■■□□□ 1.5
CLN3-262ENST00000637699 WDHD1O75717 1129 aaPredicted RBP24.39■■□□□ 1.49
CLN3-262ENST00000637699 VGLL2Q8N8G2 317 aa24.39■■□□□ 1.49
CLN3-262ENST00000637699 ZDHHC15Q96MV8 337 aa24.39■■□□□ 1.49
CLN3-262ENST00000637699 MYCP01106 439 aaPredicted RBP24.38■■□□□ 1.49
CLN3-262ENST00000637699 CETPP11597 493 aa24.38■■□□□ 1.49
CLN3-262ENST00000637699 APOBEC3HQ6NTF7 200 aaKnown RBP24.38■■□□□ 1.49
CLN3-262ENST00000637699 ERO1BQ86YB8 467 aa24.38■■□□□ 1.49
CLN3-262ENST00000637699 BTBD19C9JJ37 291 aa24.37■■□□□ 1.49
CLN3-262ENST00000637699 IRF6O14896 467 aa24.37■■□□□ 1.49
CLN3-262ENST00000637699 SLC4A8Q2Y0W8 1093 aa24.37■■□□□ 1.49
CLN3-262ENST00000637699 FAM83AQ86UY5 434 aa24.37■■□□□ 1.49
CLN3-262ENST00000637699 MRIQ9BWK5 157 aa24.37■■□□□ 1.49
CLN3-262ENST00000637699 TLR2O60603 784 aa24.36■■□□□ 1.49
CLN3-262ENST00000637699 SNAPC2Q13487 334 aa24.36■■□□□ 1.49
CLN3-262ENST00000637699 MRPL50Q8N5N7 158 aaKnown RBP24.36■■□□□ 1.49
CLN3-262ENST00000637699 HOOK2Q96ED9 719 aa24.36■■□□□ 1.49
CLN3-262ENST00000637699 ARHGAP39Q9C0H5 1083 aa24.36■■□□□ 1.49
CLN3-262ENST00000637699 ECM2O94769 699 aaPredicted RBP24.35■■□□□ 1.49
CLN3-262ENST00000637699 KIF22Q14807 665 aa24.35■■□□□ 1.49
CLN3-262ENST00000637699 FKBP1CQ5VVH2 108 aa24.35■■□□□ 1.49
CLN3-262ENST00000637699 MIGA2Q7L4E1 593 aa24.35■■□□□ 1.49
CLN3-262ENST00000637699 MAST3O60307 1309 aa24.35■■□□□ 1.49
CLN3-262ENST00000637699 IFIT1P09914 478 aaKnown RBP24.34■■□□□ 1.49
CLN3-262ENST00000637699 PUM3Q15397 648 aaKnown RBP24.34■■□□□ 1.49
CLN3-262ENST00000637699 SH3TC2Q8TF17 1288 aa24.34■■□□□ 1.49
CLN3-262ENST00000637699 SUGT1Q9Y2Z0 365 aa24.34■■□□□ 1.49
CLN3-262ENST00000637699 LACTBP83111 547 aaPredicted RBP24.33■■□□□ 1.49
CLN3-262ENST00000637699 PPIL2Q13356 520 aa24.33■■□□□ 1.49
CLN3-262ENST00000637699 DCAF15Q66K64 600 aa24.33■■□□□ 1.49
CLN3-262ENST00000637699 HHIPL2Q6UWX4 724 aa24.33■■□□□ 1.49
CLN3-262ENST00000637699 ZCCHC17Q9NP64 241 aaKnown RBP24.33■■□□□ 1.49
CLN3-262ENST00000637699 FGFR2P21802 821 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms