RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CREBZFQ9NS37 354 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 TLR7Q9NYK1 1049 aaKnown RBP12.1□□□□□ -0.47
CLN3-261ENST00000637686 SERPINA10Q9UK55 444 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 SUGT1Q9Y2Z0 365 aa12.1□□□□□ -0.47
CLN3-261ENST00000637686 SPDYE2BA6NHP3 402 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 UQCRFS1P1P0C7P4 283 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 SPDYE6P0CI01 402 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 ARID4AP29374 1257 aaPredicted RBP12.09□□□□□ -0.47
CLN3-261ENST00000637686 CCDC158Q5M9N0 1113 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 TTC39AQ5SRH9 613 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 CST9Q5W186 159 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 AACSQ86V21 672 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 GCC1Q96CN9 775 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 KIF1BPQ96EK5 621 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 ZNF408Q9H9D4 720 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 HMG20BQ9P0W2 317 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 DBNLQ9UJU6 430 aaKnown RBP12.09□□□□□ -0.47
CLN3-261ENST00000637686 AOX1Q06278 1338 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 PITPNM2Q9BZ72 1349 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 SALL1Q9NSC2 1324 aa12.09□□□□□ -0.47
CLN3-261ENST00000637686 CLRN2A0PK11 232 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 MYO1BO43795 1136 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 CELF2O95319 508 aaKnown RBP12.08□□□□□ -0.48
CLN3-261ENST00000637686 LDHBP07195 334 aaKnown RBP12.08□□□□□ -0.48
CLN3-261ENST00000637686 PRDX5P30044 214 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 MCAMP43121 646 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 HDLBPQ00341 1268 aaKnown RBP12.08□□□□□ -0.48
CLN3-261ENST00000637686 B4GALNT3Q6L9W6 998 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 PI16Q6UXB8 463 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 SMC5Q8IY18 1101 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 CLASRPQ8N2M8 674 aaKnown RBP12.08□□□□□ -0.48
CLN3-261ENST00000637686 SPATA5Q8NB90 893 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 TEKT1Q969V4 418 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 DCTPP1Q9H773 170 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 ABCF2Q9UG63 623 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 MAST3O60307 1309 aa12.08□□□□□ -0.48
CLN3-261ENST00000637686 PDS5AQ29RF7 1337 aaKnown RBP12.08□□□□□ -0.48
CLN3-261ENST00000637686 PRAMEF18Q5VWM3 479 aa12.07□□□□□ -0.48
CLN3-261ENST00000637686 ZGPATQ8N5A5 531 aaKnown RBP12.07□□□□□ -0.48
CLN3-261ENST00000637686 DNAJC5GQ8N7S2 189 aa12.07□□□□□ -0.48
CLN3-261ENST00000637686 TRPM7Q96QT4 1865 aa12.07□□□□□ -0.48
CLN3-261ENST00000637686 MRIQ9BWK5 157 aa12.07□□□□□ -0.48
CLN3-261ENST00000637686 TDRD3Q9H7E2 651 aaKnown RBP12.07□□□□□ -0.48
CLN3-261ENST00000637686 SNRKQ9NRH2 765 aa12.07□□□□□ -0.48
CLN3-261ENST00000637686 SMARCA5O60264 1052 aaPredicted RBP12.06□□□□□ -0.48
CLN3-261ENST00000637686 TBC1D9Q6ZT07 1266 aa12.06□□□□□ -0.48
CLN3-261ENST00000637686 APOBEC3FQ8IUX4 373 aaKnown RBP12.06□□□□□ -0.48
CLN3-261ENST00000637686 CDCA5Q96FF9 252 aa12.06□□□□□ -0.48
CLN3-261ENST00000637686 ZDHHC15Q96MV8 337 aa12.06□□□□□ -0.48
CLN3-261ENST00000637686 LRRCC1Q9C099 1032 aa12.06□□□□□ -0.48
CLN3-261ENST00000637686 VEZTQ9HBM0 779 aa12.06□□□□□ -0.48
CLN3-261ENST00000637686 ZNF70Q9UC06 446 aaPredicted RBP12.06□□□□□ -0.48
CLN3-261ENST00000637686 ABT1Q9ULW3 272 aaKnown RBP12.06□□□□□ -0.48
CLN3-261ENST00000637686 IFIT2P09913 472 aaKnown RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 ZAP70P43403 619 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 DIXDC1Q155Q3 683 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 SPTY2D1Q68D10 685 aaPredicted RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 APOBEC3HQ6NTF7 200 aaKnown RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 HHIPL2Q6UWX4 724 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 ERICH6Q7L0X2 663 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 DZIP1Q86YF9 867 aaKnown RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 ZNF512BQ96KM6 892 aaPredicted RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 MKRN1Q9UHC7 482 aaKnown RBP12.05□□□□□ -0.48
CLN3-261ENST00000637686 CEP350Q5VT06 3117 aa12.05□□□□□ -0.48
CLN3-261ENST00000637686 IGHDP01880 384 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 CYP2E1P05181 493 aaPredicted RBP12.04□□□□□ -0.48
CLN3-261ENST00000637686 KLRG1Q96E93 195 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 DEFB129Q9H1M3 183 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 GBA2Q9HCG7 927 aaPredicted RBP12.04□□□□□ -0.48
CLN3-261ENST00000637686 DAGLAQ9Y4D2 1042 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 TLL2Q9Y6L7 1015 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 ECM29Q5VYK3 1845 aa12.04□□□□□ -0.48
CLN3-261ENST00000637686 AKAP11Q9UKA4 1901 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 TCP10L2B9ZVM9 353 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 CACNB3P54284 484 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 MECOMQ03112 1051 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 DEFB115Q30KQ5 88 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 SAPCD2Q86UD0 394 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 C2orf69Q8N8R5 385 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 RAI14Q9P0K7 980 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 LRP2BPQ9P2M1 347 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 NDUFB9Q9Y6M9 179 aa12.03□□□□□ -0.48
CLN3-261ENST00000637686 RASSF10A6NK89 507 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 RASA3Q14644 834 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 CDC42EP5Q6NZY7 148 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 SLF2Q8IX21 1173 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 ZNF384Q8TF68 577 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 NSUN4Q96CB9 384 aaKnown RBP12.02□□□□□ -0.49
CLN3-261ENST00000637686 FAM163AQ96GL9 167 aaPredicted RBP12.02□□□□□ -0.49
CLN3-261ENST00000637686 PIH1D3Q9NQM4 214 aaKnown RBP12.02□□□□□ -0.49
CLN3-261ENST00000637686 PPP2R3BQ9Y5P8 575 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 CNTNAP1P78357 1384 aa12.02□□□□□ -0.49
CLN3-261ENST00000637686 MYH2Q9UKX2 1941 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 NF2P35240 595 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 TNNI2P48788 182 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 HUNKP57058 714 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 GSTO1P78417 241 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 TNFAIP1Q13829 316 aa12.01□□□□□ -0.49
CLN3-261ENST00000637686 PAXIP1Q6ZW49 1069 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms