RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 EVI5O60447 810 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 ITGA6P23229 1130 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 C17orf99Q6UX52 265 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 Q7L0L9 218 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 DEFB123Q8N688 67 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 U2AF1L4Q8WU68 220 aaKnown RBP18.74■□□□□ 0.59
CLN3-249ENST00000636685 MPHOSPH8Q99549 860 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 TMEM39BQ9GZU3 492 aa18.74■□□□□ 0.59
CLN3-249ENST00000636685 TDRD3Q9H7E2 651 aaKnown RBP18.74■□□□□ 0.59
CLN3-249ENST00000636685 ZCCHC17Q9NP64 241 aaKnown RBP18.74■□□□□ 0.59
CLN3-249ENST00000636685 BIN2Q9UBW5 565 aaPredicted RBP18.74■□□□□ 0.59
CLN3-249ENST00000636685 SPDYE5A6NIY4 337 aa18.73■□□□□ 0.59
CLN3-249ENST00000636685 TCP10L2B9ZVM9 353 aa18.73■□□□□ 0.59
CLN3-249ENST00000636685 TAF5LO75529 589 aa18.73■□□□□ 0.59
CLN3-249ENST00000636685 DDX58O95786 925 aaKnown RBP18.73■□□□□ 0.59
CLN3-249ENST00000636685 FKBP1AP62942 108 aaKnown RBP18.73■□□□□ 0.59
CLN3-249ENST00000636685 HELBQ8NG08 1087 aaPredicted RBP18.73■□□□□ 0.59
CLN3-249ENST00000636685 SNCAIPQ9Y6H5 919 aa18.73■□□□□ 0.59
CLN3-249ENST00000636685 MYPNQ86TC9 1320 aa18.73■□□□□ 0.59
CLN3-249ENST00000636685 MGAMO43451 1857 aa18.72■□□□□ 0.59
CLN3-249ENST00000636685 FMNL1O95466 1100 aaPredicted RBP18.72■□□□□ 0.59
CLN3-249ENST00000636685 IL1R1P14778 569 aa18.72■□□□□ 0.59
CLN3-249ENST00000636685 CWF19L2Q2TBE0 894 aaKnown RBP18.72■□□□□ 0.59
CLN3-249ENST00000636685 UBE3BQ7Z3V4 1068 aa18.72■□□□□ 0.59
CLN3-249ENST00000636685 UNC93B1Q9H1C4 597 aa18.72■□□□□ 0.59
CLN3-249ENST00000636685 STXBP5LQ9Y2K9 1186 aa18.72■□□□□ 0.59
CLN3-249ENST00000636685 IRF6O14896 467 aa18.71■□□□□ 0.59
CLN3-249ENST00000636685 HOXD10P28358 340 aa18.71■□□□□ 0.59
CLN3-249ENST00000636685 UBXN2AP68543 259 aa18.71■□□□□ 0.59
CLN3-249ENST00000636685 SNAPC2Q13487 334 aa18.71■□□□□ 0.59
CLN3-249ENST00000636685 C15orf52Q6ZUT6 534 aaKnown RBP18.71■□□□□ 0.59
CLN3-249ENST00000636685 SGPL1O95470 568 aa18.7■□□□□ 0.58
CLN3-249ENST00000636685 ZNF804AQ7Z570 1209 aa18.7■□□□□ 0.58
CLN3-249ENST00000636685 ERO1BQ86YB8 467 aa18.7■□□□□ 0.58
CLN3-249ENST00000636685 PI4KAP2A4QPH2 592 aa18.69■□□□□ 0.58
CLN3-249ENST00000636685 H7C1W4 665 aa18.69■□□□□ 0.58
CLN3-249ENST00000636685 GPR153Q6NV75 609 aa18.69■□□□□ 0.58
CLN3-249ENST00000636685 KSR2Q6VAB6 950 aa18.69■□□□□ 0.58
CLN3-249ENST00000636685 DZIP1LQ8IYY4 767 aaKnown RBP18.69■□□□□ 0.58
CLN3-249ENST00000636685 PI4KAP1Q8N8J0 262 aa18.69■□□□□ 0.58
CLN3-249ENST00000636685 ZKSCAN4Q969J2 545 aaPredicted RBP18.69■□□□□ 0.58
CLN3-249ENST00000636685 NEURL1BA8MQ27 555 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 PRKCZQ05513 592 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 PPIL2Q13356 520 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 WRNIP1Q96S55 665 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 MTMR10Q9NXD2 777 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 TTF2Q9UNY4 1162 aaKnown RBP18.68■□□□□ 0.58
CLN3-249ENST00000636685 ADGRA2Q96PE1 1338 aa18.68■□□□□ 0.58
CLN3-249ENST00000636685 TNNI2P48788 182 aa18.67■□□□□ 0.58
CLN3-249ENST00000636685 NEXNQ0ZGT2 675 aa18.67■□□□□ 0.58
CLN3-249ENST00000636685 GDF15Q99988 308 aa18.67■□□□□ 0.58
CLN3-249ENST00000636685 PLA2G12BQ9BX93 195 aa18.67■□□□□ 0.58
CLN3-249ENST00000636685 SERPINA10Q9UK55 444 aa18.67■□□□□ 0.58
CLN3-249ENST00000636685 TFRCP02786 760 aaKnown RBP18.66■□□□□ 0.58
CLN3-249ENST00000636685 CSF1RP07333 972 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 ZNF853P0CG23 659 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 MFSD14BQ5SR56 506 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 C8orf58Q8NAV2 365 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 RUNDC1Q96C34 613 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 GABRQQ9UN88 632 aa18.66■□□□□ 0.58
CLN3-249ENST00000636685 VCANP13611 3396 aa18.65■□□□□ 0.58
CLN3-249ENST00000636685 PDHXO00330 501 aa18.65■□□□□ 0.58
CLN3-249ENST00000636685 BMP8BP34820 402 aa18.65■□□□□ 0.58
CLN3-249ENST00000636685 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.65■□□□□ 0.58
CLN3-249ENST00000636685 SLAIN1Q8ND83 568 aa18.65■□□□□ 0.58
CLN3-249ENST00000636685 ZMYND8Q9ULU4 1186 aaPredicted RBP18.65■□□□□ 0.58
CLN3-249ENST00000636685 FAM205AQ6ZU69 1335 aa18.65■□□□□ 0.58
CLN3-249ENST00000636685 CRKP46108 304 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 BCAMP50895 628 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 CACNB3P54284 484 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 CCDC30Q5VVM6 783 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 ANKRD23Q86SG2 305 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 PAWRQ96IZ0 340 aaKnown RBP18.64■□□□□ 0.57
CLN3-249ENST00000636685 DEFB118Q96PH6 123 aa18.64■□□□□ 0.57
CLN3-249ENST00000636685 ANKRD18BA2A2Z9 1011 aa18.63■□□□□ 0.57
CLN3-249ENST00000636685 ELNP15502 786 aa18.63■□□□□ 0.57
CLN3-249ENST00000636685 CASP7P55210 303 aa18.63■□□□□ 0.57
CLN3-249ENST00000636685 FCGRTP55899 365 aa18.63■□□□□ 0.57
CLN3-249ENST00000636685 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-249ENST00000636685 C7orf61Q8IZ16 206 aa18.63■□□□□ 0.57
CLN3-249ENST00000636685 DOCK3Q8IZD9 2030 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 ADCY3O60266 1144 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 INHAP05111 366 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 PPATQ06203 517 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 GCKRQ14397 625 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 LRIT3Q3SXY7 679 aa18.62■□□□□ 0.57
CLN3-249ENST00000636685 DIS3LQ8TF46 1054 aaKnown RBP18.62■□□□□ 0.57
CLN3-249ENST00000636685 PLIN1O60240 522 aa18.61■□□□□ 0.57
CLN3-249ENST00000636685 BCRP11274 1271 aa18.61■□□□□ 0.57
CLN3-249ENST00000636685 MOGSQ13724 837 aa18.61■□□□□ 0.57
CLN3-249ENST00000636685 GRIK5Q16478 980 aa18.61■□□□□ 0.57
CLN3-249ENST00000636685 IFT57Q9NWB7 429 aa18.61■□□□□ 0.57
CLN3-249ENST00000636685 INPP5BP32019 993 aa18.6■□□□□ 0.57
CLN3-249ENST00000636685 TDRD7Q8NHU6 1098 aaKnown RBP18.6■□□□□ 0.57
CLN3-249ENST00000636685 CYP2C8P10632 490 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 SYN1P17600 705 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 FLT3LGP49771 235 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 GNAI1P63096 354 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 MIGA2Q7L4E1 593 aa18.59■□□□□ 0.57
CLN3-249ENST00000636685 G2E3Q7L622 706 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms